Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1086 ATGAAGATGGGAAAAGCACTATGTTGTGATAAACAAGGAGTGAGAAGAGGAGCTTGGACCCCAGAAGAAGATGAAGCATTGGTTGAGTATATTAAGATGAATGGCCATGGAAGTTGGCGTACACTTCCTATGCATGCAGGTCTTCTTCGATGTGGAAAAAGTTGTCGACTGAGGTGGATAAATTATCTTCGCCCCGATATCAAGCGCGGACCATTCACTACTGAAGAAGAAAGTACAATTATTCAGCTTCATGGCATGCTTGGCAACCGGTGGGCTACTATAGCATCCCAACTTCCAGGAAGAACAGACAATGAGATTAAAAACTACTGGAACACTCAACTGAAGAAGCGACTCCCTAACTCGGGACATTTCGTAGGGTCACAGCAGCCCTCTTTCAGCACTGATCATAGTACTATTGTCAAAACTGAATCCCCTTCTATGCGTCACATGGTGCAATGGGAAAATGCCAGGGTCGAGGCCGAGGCGAGGTTGTCAATGGAATCTTCACTACTTAATTCATGGTCAACGAGTGAATCACACCCTGATCACTTTCTTCAACTTTGGCATTCTGAGGTTGGACAATCGTTTCGCGCGATCAAGGGAAAAGAAGGAGGAGGAGGAGTGTGTCAAAGTCTTGTCTCGCAGGCATCATCATCAAAATTGGAGTCATGTTCAGATGTCTCATTGCAGGATAAAAACACCGGCAGCAGTACCTTCGCAAACATGAAGCAGGAGCAAGATAGCAGCTATAAACCGAAGCTTGAAGATGGCACTGCTGAATCTGAGTTAGGCTATTATGAATTTCTTGATTCTTCTGATTCTGCATTGAATCACATGCTAGATATGCATGATGGTGAAATCGGATTCTTATGCGAGTCTGACAGTTTCCTCAATACCCTTGATGGTTAG 909 0.4444 MKMGKALCCDKQGVRRGAWTPEEDEALVEYIKMNGHGSWRTLPMHAGLLRCGKSCRLRWINYLRPDIKRGPFTTEEESTIIQLHGMLGNRWATIASQLPGRTDNEIKNYWNTQLKKRLPNSGHFVGSQQPSFSTDHSTIVKTESPSMRHMVQWENARVEAEARLSMESSLLNSWSTSESHPDHFLQLWHSEVGQSFRAIKGKEGGGGVCQSLVSQASSSKLESCSDVSLQDKNTGSSTFANMKQEQDSSYKPKLEDGTAESELGYYEFLDSSDSALNHMLDMHDGEIGFLCESDSFLNTLDG* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1086 302 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 290 - -
Lan8g1086 302 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Lan8g1086 302 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lan8g1086 302 SMART sant 68 116 IPR001005 -
Lan8g1086 302 SMART sant 15 65 IPR001005 -
Lan8g1086 302 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lan8g1086 302 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Lan8g1086 302 Gene3D - 16 68 - -
Lan8g1086 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lan8g1086 302 Gene3D - 71 118 - -
Lan8g1086 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Lan8g1086 302 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 3 290 - -
Lan8g1086 302 CDD SANT 71 112 IPR001005 -
Lan8g1086 302 CDD SANT 18 63 IPR001005 -
Lan8g1086 302 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lan8g1086 302 MobiDBLite consensus disorder prediction 235 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1086 Lan-Chr8 14117016 14121686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1086 3 296 MYB Transcription Factor Family AT3G61250 49.835 7.46e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan8g1086 Myb_DNA-binding 4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1086 K09422 - gmx:100782075 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1086 8 14117016 14121686 Lan20g0049 20 263907 266194 LSH
Lan8g1086 8 14117016 14121686 Lan4g1866 4 27068219 27069702 LSH