Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1082 ATGCACTTTTCACACCCATATCACAAAATGGTTCAACTCAACCACTTTCCCTTCACTCACCTCACATTCCTTCACCTCCTTTTCCTCCTTCTTCATGCAACTGATGCACAAATATCAGCAGAACCACTTCCTACATACATCTCACGCCACAATTGGGAACCTTCTTTTGCAATCACAACTGGAGCAGTTATATGTTCTCTTCTTTTATTAGGATTGATTTCAATCTACATCAGGTTCTGCACAGAATCAAGATACAACACCCGAAACAATAACACACTTCTTGGCACTACTAATACATCACAAAGGCTATGTTCTTGTGCACAAGGCATCAACAATGAACTTCTTAGTACCTTTCCAATCCTCTTTTACTCTACTATCAAGGATCTCAAAAAGGGTAAAGAGTCATTGGAATGTGCTGTTTGCTTGAATGATTTCAAAGACTATGATACCCTCAGGTTGCTACCAAAATGCAACCATGTTTTTCATCCTTCATGCATAGACTCATGGCTATGTTCTCACGTGACATGCCCTGTTTGTCGAGCCAATTTGAACCAAGATTCATGTGAAGTTGATGTAACGGTGGAAACCCATTTGAGTACTCCTCAAAGGGTGCCAGAAAGTGCAGGCTTTATAGCAGAACATGTTGGTGGTGATGAGAACAACAACGACCCAATAGAACAAAACATAATCCAAGTTGTGAGTAACTTAAAGGAAGTTGAGAGTGGTGATCTTCGTTCATCAAAGTTGAAGCTTTTGAGGTCAAATTCAACGGGTCATTCAGTTTTGGAATCAGGGAAGAGTGTGGAAAGGTACACACTTGTGTTACCAGAGGATGTGAGGAAGTACATTCTAGTGAACCATAATAACTACGATGGAAGAAGGGTTCAGCGTTCAGCTAGCCACAATAACGTTGTTAAGATGCCAATGTTGGAAAGTTCGAGGAAATGTTGGAGTGACAGTGAAGGGTACAACAGCATGAGGGTGTTGTTGACGGCGCCACTTGTTGCAAGCCGTGGTTAA 1020 0.4147 MHFSHPYHKMVQLNHFPFTHLTFLHLLFLLLHATDAQISAEPLPTYISRHNWEPSFAITTGAVICSLLLLGLISIYIRFCTESRYNTRNNNTLLGTTNTSQRLCSCAQGINNELLSTFPILFYSTIKDLKKGKESLECAVCLNDFKDYDTLRLLPKCNHVFHPSCIDSWLCSHVTCPVCRANLNQDSCEVDVTVETHLSTPQRVPESAGFIAEHVGGDENNNDPIEQNIIQVVSNLKEVESGDLRSSKLKLLRSNSTGHSVLESGKSVERYTLVLPEDVRKYILVNHNNYDGRRVQRSASHNNVVKMPMLESSRKCWSDSEGYNSMRVLLTAPLVASRG* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1082 339 CDD RING-H2_EL5_like 137 180 - -
Lan8g1082 339 PANTHER RING FINGER DOMAIN-CONTAINING 14 203 - -
Lan8g1082 339 PANTHER RING FINGER DOMAIN-CONTAINING 240 306 - -
Lan8g1082 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 187 IPR013083 -
Lan8g1082 339 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Lan8g1082 339 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 203 - -
Lan8g1082 339 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 240 306 - -
Lan8g1082 339 SMART ring_2 138 179 IPR001841 -
Lan8g1082 339 Pfam Ring finger domain 137 180 IPR001841 -
Lan8g1082 339 SUPERFAMILY RING/U-box 132 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1082 Lan-Chr8 14030746 14032125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1082 10 315 Rapid Response to Elicitors AT3G05200 33.981 8.71e-52 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1082 K10664 - gmx:100782532 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0935 7 9006169 9007669 Lan8g1082 8 14030746 14032125 LSH
Lan8g1082 8 14030746 14032125 Lan13g0768 13 7843569 7844682 LSH