Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1065 ATGTGCTTTCAAACGGTGGCGCACCAAAGGGGATCAGGTGAGTTCATCAGGTTCACCGGCGGCGAAGGCAGCGGTGGTAGTGATGAAAAACATGGTGGTGGAAGTTCTAGGACACCTGAGTCACTAGAATTGAACCAAGTGATGGAGCAAGGTGAGGTTTCAATGCAAGGTTCTTCTATGGCTTCAGGTTTCAGCATGGCAAGAGAGTCCACAGAAATGGTTTCAGGTCTGACTCATGTGGCCTCAAGATCAAGCCCTAGAGGCACTGAGTGGGTTCAGGTTCAGAGAAGTAGTGGTTTTCCTATGATGTCAGGTTTTGGACATGTTGTATCTTCTTCACCTAGTACTTTGTCTTCTTTCTATTCTGGTTCTGGTTTGGTTTCTGGGTCATGGGTTGGGCACAAAAGAGGGCGTGAAGAAGAGAGTAGTGGTAGTTCTTATCAGTTGATGCAACAAGCTGATCCTAAACACTTTAGACCCATTGGTGACTTCAGGATACCTACACAAGGAGAATCATCATCAGTGACAAAAGAAGCTGCCACCACTGGAATCACGGTGACTGTCACTACACCGGCGACACCATCAACCGAAACAGCATCAAATGAAGAAGCCAGAGAGAGGAGAAGGTACAGGGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCAGCAGAAATTCGTGATCCACACAAAGCAGCAAGAGTTTGGCTTGGCACATTTGATACAGCAGAAGCAGCAGCAAGAGCTTATGATGAAGCTGCATTAAGGTTCAGAGGAAACAGAGCAAAGCTAAACTTCCCTCAAGATATTAGAGCATTGGCAGTTCCACCACCAGTTCGCACTTTTCCAGCAACCACACAGCTCGTCGCCGCCACCTCTGACTCCTCTGCCACTCATTTCCTGCAGCCCCCGACCGCAATCGCGACACTGCCACAATTGCAGCCAAGTTTCATGCAACAGCAGCAGCCATTACTTCAGGGATCCTCTGATTTGATCAGAGACTATTGGCAATATTCTCAGCTTCTCCAAAGTTCTAGTGATTTTAATCAACAACAACAATTACAACAACAACAACAACCTTATAGTTTGTGGCAGCAGTGGTACTATAGTTCACAATTCGCTTCACATCAATCATCTTCATTGTTATCGTCATCAGCCTCTTTATCCTCTTCTATATCAACAAATGCATCATTTTCACCATCTACTCAATTTTCCTCTGCTTCATTTCCCCTGTTTTCTAGTCAACAAATGGACTATTTCCGGCCACCGGGGAACCACCCTCAAGGTGGCGGAAGCAGCGGCAGCGGATCGGAGTTTCCACCATCAACTTGGTCAGATACCAGTGGCTATCCACCACCTCCTAGTTGA 1365 0.4711 MCFQTVAHQRGSGEFIRFTGGEGSGGSDEKHGGGSSRTPESLELNQVMEQGEVSMQGSSMASGFSMARESTEMVSGLTHVASRSSPRGTEWVQVQRSSGFPMMSGFGHVVSSSPSTLSSFYSGSGLVSGSWVGHKRGREEESSGSSYQLMQQADPKHFRPIGDFRIPTQGESSSVTKEAATTGITVTVTTPATPSTETASNEEARERRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPQDIRALAVPPPVRTFPATTQLVAATSDSSATHFLQPPTAIATLPQLQPSFMQQQQPLLQGSSDLIRDYWQYSQLLQSSSDFNQQQQLQQQQQPYSLWQQWYYSSQFASHQSSSLLSSSASLSSSISTNASFSPSTQFSSASFPLFSSQQMDYFRPPGNHPQGGGSSGSGSEFPPSTWSDTSGYPPPPS* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1065 454 MobiDBLite consensus disorder prediction 415 454 - -
Lan8g1065 454 Pfam AP2 domain 209 258 IPR001471 GO:0003700|GO:0006355
Lan8g1065 454 SUPERFAMILY DNA-binding domain 209 268 IPR016177 GO:0003677
Lan8g1065 454 MobiDBLite consensus disorder prediction 190 211 - -
Lan8g1065 454 Gene3D AP2/ERF domain 208 268 IPR036955 GO:0003700|GO:0006355
Lan8g1065 454 SMART rav1_2 209 272 IPR001471 GO:0003700|GO:0006355
Lan8g1065 454 PANTHER DNA-BINDING DOMAIN 65 415 IPR044808 GO:0003700|GO:0009873
Lan8g1065 454 MobiDBLite consensus disorder prediction 427 444 - -
Lan8g1065 454 MobiDBLite consensus disorder prediction 13 40 - -
Lan8g1065 454 CDD AP2 217 268 IPR001471 GO:0003700|GO:0006355
Lan8g1065 454 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 65 415 - -
Lan8g1065 454 PRINTS Ethylene responsive element binding protein signature 210 221 IPR001471 GO:0003700|GO:0006355
Lan8g1065 454 PRINTS Ethylene responsive element binding protein signature 232 248 IPR001471 GO:0003700|GO:0006355
Lan8g1065 454 ProSiteProfiles AP2/ERF domain profile. 209 266 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1065 Lan-Chr8 13377645 13380767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1065 187 270 AP2-EREBP Transcription Factor Family AT5G61890 63.218 4.69e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan8g1065 AP2 9.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1065 - - gmx:100804843 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g1023 7 10715172 10717364 Lan8g1065 8 13377645 13380767 LSH
Lan8g1065 8 13377645 13380767 Lan8g0755 8 9743133 9744947 PCT
Lan8g0755 8 9743133 9744947 Lan8g1065 8 13377645 13380767 PCT