Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1056 ATGTTGTTGTTGGGTTCAGTAGAAAAGGAAGCAAATTTGAGAGAGGAAGGAGGGAATAAGAAGAAGAAGAAAAATATGGGGAGAGGGAAAATTGAGATAAAAAAGATTGAGAATTTGAATAGTAGACAAGTAACATTCTCAAAAAGGCGTAATGGGTTGATGAAAAAAGCAAGGGAGTTATCTGTTTTGTGTGATGCTGAGGTTGCTGTCATAATATTTTCTAGCACTGGGAAACTTTATGAGTTTTCAAATTCAAGCATGGAGCATACCCTTTCAAGGTACAGCAGAGGCCTGGATTTAGAATGTGGAGAACAATCTAGTGATGAGCCCCCAACAATGGTTATAGAGTCTGATTCAAACCTTCTGAAGGATGAAATAACAAAGCTTCGTTCCGCATACTTAAGGATGATAGGTAAGGAACTTGATGGATTAAGTCTTAAAGAATTACAACACCTAGAAAATCAACTGAATGAAGGGATACTAGCTGTTAAAGACAAGAAGGAACAAGTACTTCTAGAACAGCTTAGGAGGTCTAGATTACAGGAAGAAAAGGCCATGCTGGAGAATGAATCTCTTCGCAAACAACTTTTGGAAATGGAAAATAGTACAAGGTCACAATTCCTTCAGCTTAATTCTTTAGATAGGCCTAATACCATCAACTGTTCAAAATTCCTTTCCAATTGTGCTTCAGAGGACAATGAGCTTTCAGATGCATCCTTGCAGTTAGGGTTGTCAACAGATTATGGTCGCAATAGGAAAACATTAAAGATAGAACCATGCAATGGCTCAGGGAGTCAAGTGGCATCACAGTGA 813 0.3825 MLLLGSVEKEANLREEGGNKKKKKNMGRGKIEIKKIENLNSRQVTFSKRRNGLMKKARELSVLCDAEVAVIIFSSTGKLYEFSNSSMEHTLSRYSRGLDLECGEQSSDEPPTMVIESDSNLLKDEITKLRSAYLRMIGKELDGLSLKELQHLENQLNEGILAVKDKKEQVLLEQLRRSRLQEEKAMLENESLRKQLLEMENSTRSQFLQLNSLDRPNTINCSKFLSNCASEDNELSDASLQLGLSTDYGRNRKTLKIEPCNGSGSQVASQ* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1056 270 ProSitePatterns MADS-box domain signature. 28 82 IPR002100 GO:0003677|GO:0046983
Lan8g1056 270 CDD MADS_MEF2_like 31 94 IPR033896 GO:0000977|GO:0045944
Lan8g1056 270 PRINTS MADS domain signature 28 48 IPR002100 GO:0003677|GO:0046983
Lan8g1056 270 PRINTS MADS domain signature 48 63 IPR002100 GO:0003677|GO:0046983
Lan8g1056 270 PRINTS MADS domain signature 63 84 IPR002100 GO:0003677|GO:0046983
Lan8g1056 270 Gene3D - 38 108 IPR036879 GO:0003677|GO:0046983
Lan8g1056 270 PANTHER MADS BOX PROTEIN 26 248 - -
Lan8g1056 270 ProSiteProfiles MADS-box domain profile. 26 86 IPR002100 GO:0003677|GO:0046983
Lan8g1056 270 Coils Coil 149 202 - -
Lan8g1056 270 ProSiteProfiles K-box domain profile. 112 202 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan8g1056 270 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 26 248 - -
Lan8g1056 270 Pfam K-box region 116 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan8g1056 270 SMART madsneu2 26 85 IPR002100 GO:0003677|GO:0046983
Lan8g1056 270 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 35 82 IPR002100 GO:0003677|GO:0046983
Lan8g1056 270 SUPERFAMILY SRF-like 27 99 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1056 Lan-Chr8 13195526 13200653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1056 26 254 MADS-box Gene Family AT5G13790 46.473 7.59e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan8g1056 K-box 5.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1056 - - lang:109353632 496.893