Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1038 ATGGAGAGTGAGATTCTAAAAACTCATTGGTTTGAAGAACCCCAAGACCTTCTTCCACCATGGACCAACAACAATAACAACAACAACAACCTCATAAACGACGACGTTTCATCCTTCAAATCATTTCTCCAAGTTGGTGATTGGTTCATGAACTCTACCTTAAACAATGACATTGCTTTCACTTCAAACCAAAATCAAAACTTTGCGATTCAACCTTTGAACCCATCTACCCCATTTTTCAACTTAAACACCAACAACAACCCTTTTACCAATGATTTTGATTATGGGTCTGAACCCGTTTTACCCAATTCAAATTCCAATCTTTTGATGGGTTTCAACGCCAATGTTAACACTCTTGAGCTGAGTTCAAACATGGGGTTCAACCCAACTCGTGATGTTGAACTCAGTGGTGGGTTTAATAACAACACAATGGGTATGGTTGAAGAGAATTTTCATGGCTCTGGACCTTCCATTTCGATGTTTTCGAACAATGTTAATGTTTTGCAGCAGCAGAGTATTGAGATTCCTGCTCCGGCGGCTGTGCCACCACATCCGGTGACTCTTTTTCAGAAGCGCCGCCGTGGCTCTGATGATAAGCTGGGAGCATTGGAGATTCGGGCCGCGACGCGGCTCGCTGCAATGAAAGCTGAGGAAGGGTTGAATGATCATGATGATGGTGATGATGATGATGATATTGTTGAGATTGATAAGTATGAGGAGAATTTGAATAGTGGAGGGAGTAATTTTAATGGAAATAATAGTAGTGGTGATAATAATGGTGGAATTCTGAAGGGGAAGAAGAAAGTGGTGCCGGCGAAGAATCTTCTGGCGGAGAGGCGCCGCCGGAAGAAGCTCAATGATAGGCTGTACATGCTTAGGTCCGTCGTGCCAAAGATTAGCAAGATGGACAGGGCTTCAATACTTGGGGATGCAATTGAGTACTTGAAGGATTTAAAACAGAAGGTTAATGTTCTTCATAATGAGCTGCAGTCAGTTCCATCTGGCTCATCTGGGACTGTGACACCTTCTTCAAGCTTTCACTCTGTGACACCCACTCCGCCAACTCTTCCTTCCAGGGTGAAGGATGAACTATGTCTTAGCAACTTGTCAAGCCCTAAAGGTCACTCACCAAAGGTGGAGGTTAGGTTGAGTGAAGAAAGAGCAATCAATATCCATATGTTTTGTGCCCGCAAGCCCGGCCTTTTCCTTTCAACCATGAGCGCATTAGATAGCCTCGGATTGGATGTTCAGCAGGCAGTTATCAGCTGTTTCAATGGTTTTGCTTTAGATGTGTTCAGAGCTGAGCAATGCAGAGACCAGAATCTTCTCCCTGAGCAGATTAAAGCAATGTTGTTGCAGGCAACAGGTTTTCATGGAATGATGTAA 1386 0.4372 MESEILKTHWFEEPQDLLPPWTNNNNNNNNLINDDVSSFKSFLQVGDWFMNSTLNNDIAFTSNQNQNFAIQPLNPSTPFFNLNTNNNPFTNDFDYGSEPVLPNSNSNLLMGFNANVNTLELSSNMGFNPTRDVELSGGFNNNTMGMVEENFHGSGPSISMFSNNVNVLQQQSIEIPAPAAVPPHPVTLFQKRRRGSDDKLGALEIRAATRLAAMKAEEGLNDHDDGDDDDDIVEIDKYEENLNSGGSNFNGNNSSGDNNGGILKGKKKVVPAKNLLAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKDLKQKVNVLHNELQSVPSGSSGTVTPSSSFHSVTPTPPTLPSRVKDELCLSNLSSPKGHSPKVEVRLSEERAINIHMFCARKPGLFLSTMSALDSLGLDVQQAVISCFNGFALDVFRAEQCRDQNLLPEQIKAMLLQATGFHGMM* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1038 461 MobiDBLite consensus disorder prediction 330 355 - -
Lan8g1038 461 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 274 337 IPR036638 GO:0046983
Lan8g1038 461 SMART finulus 275 324 IPR011598 GO:0046983
Lan8g1038 461 Pfam Helix-loop-helix DNA-binding domain 276 318 IPR011598 GO:0046983
Lan8g1038 461 MobiDBLite consensus disorder prediction 242 265 - -
Lan8g1038 461 MobiDBLite consensus disorder prediction 242 260 - -
Lan8g1038 461 Gene3D - 266 333 IPR036638 GO:0046983
Lan8g1038 461 MobiDBLite consensus disorder prediction 330 359 - -
Lan8g1038 461 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 61 461 - -
Lan8g1038 461 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
Lan8g1038 461 PANTHER BHLH TRANSCRIPTIONAL FACTOR 61 461 - -
Lan8g1038 461 CDD bHLH_AtAMS_like 272 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1038 Lan-Chr8 12463817 12468605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1038 79 435 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 51.081 4.92e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan8g1038 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1038 - - lang:109353510 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0244 5 3089313 3093580 Lan8g1038 8 12463817 12468605 LSH