Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1034 ATGATTAAATCATTCACATCTTCATCATCCTCTAAGTCCAAGAAGAAGCAAACAATCACAACAAGAAGTGGTACTTCTTCAACAACAACAACACAAGAGAAGCAACCATCACAACAACAACATGAATCAACATGGGGAGGGAGGTACCTCGGTGTAAGGAGGAGGCCGTGGGGAAGATATGCCGCAGAAATTCGAGACCCTTCCACCAAGGAAAGGCATTGGCTCGGCACCTTTAACACAGCTGAAGAAGCTGCCCTAGCATATGATAGGGCAGGTTGCTCCATGCGTGGGTCACGTATCCGAACCAACTTTATCTATCCAGACACCCCACCAGGTTCCTCAGTCACCTCTATTGTCTCCCCCGACCAACAAACTCAAAACTATCACCACCAATACCAACAATTTTCTTCTCTTTCTGACTTGAACCAAATTACCCATCAACTTGACCCAAAATCGCATTTCGCCATAACCGGGTTTCCGGGTATGACAAATACTTCCCTATTGTATAATTATGGTTATGGTGATCAGAGTGAAGGAACCACTACCCTAGAAAGCTCAAGTTTTCACCATCTTTATGATGATGGTGAAACCCAGCTTCCACCATTGCCACCTGATATTACAAGCTCAGTGGGTTATGATATGGGTCATGGGTTTTACAGCAATGAGGCCGGGCTTTCGGGCTCAGAAATGGGTGCTGACTCAAGTGGGCCGTGTTACCAGTATAATGGTGGAAGCCCAGGGGGTTTTGATTTTGGGACCACTTCTTATTTCTTTTGA 777 0.4556 MIKSFTSSSSSKSKKKQTITTRSGTSSTTTTQEKQPSQQQHESTWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFNTAEEAALAYDRAGCSMRGSRIRTNFIYPDTPPGSSVTSIVSPDQQTQNYHHQYQQFSSLSDLNQITHQLDPKSHFAITGFPGMTNTSLLYNYGYGDQSEGTTTLESSSFHHLYDDGETQLPPLPPDITSSVGYDMGHGFYSNEAGLSGSEMGADSSGPCYQYNGGSPGGFDFGTTSYFF* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1034 258 Pfam AP2 domain 49 97 IPR001471 GO:0003700|GO:0006355
Lan8g1034 258 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 220 - -
Lan8g1034 258 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Lan8g1034 258 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Lan8g1034 258 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Lan8g1034 258 MobiDBLite consensus disorder prediction 1 48 - -
Lan8g1034 258 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Lan8g1034 258 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Lan8g1034 258 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Lan8g1034 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 3 220 - -
Lan8g1034 258 MobiDBLite consensus disorder prediction 1 45 - -
Lan8g1034 258 CDD AP2 48 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1034 Lan-Chr8 12376333 12377109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1034 37 210 AP2-EREBP Transcription Factor Family AT5G13910 46.857 5.77e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan8g1034 AP2 7.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1034 K09286 - gmx:100815668 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1034 8 12376333 12377109 Lan20g1488 20 21594581 21595575 LSH