Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1024 ATGAATGACCTTATGACCAAATCTTTCACCAACTATGTTGATCTAAAGAAAGCAGCACTGAAAGATGAAGTGGATTTGGAAGCTGGAATTCCTCATCACAACTTAGAATTAACCACTTCCAACCCAAAACTTGATGTTGATATGGGTCTCTTCCTTGAAGAAGCAGAGAAGGTGAAAGCAGAAATGAATACAATTCGCGACATACTCGAAAACCTTCAACAAGCAAATGAGGAAAGCAAGTCACTTCATAAGCCCGAAGCCCTGAAATCCTTAAGGAATAACATCAATGCTGATATAATCACAGTGCTAAAGAAAGCAAAATCCATCAAGGCTCAGCTTGAAGGAATGGACAAAGCCAATGCCGCGAATCGAAGGCTCTCAGGGTTGAAAGATGGGTCACCCGCGATCTACAGAACAAGAATCGCGGTTACGAGCGGGTTGAGGAAGAAGCTGAAAGAGCTAATGATGGAGTTTCAAGGGCTAAGGCAGAAGATGATGACTGAATACAAGGATACAGTAGGGAGAAGGTATTATACTGTGACTGGTGAGTACCCTGATGAGGAGGTGATCGAAAAGATTATATCGAACGGGGACGAAGAGTTTTTAGGGAAAGCTATTCAAGAACATGGGAGAGGGAAGGTTTTGGAAACTGTGGTGGAAATACAGGACAGGTATGATGCTGCTAAAGAGATTGAGAAGAGTTTGTTGGAGTTGCATCAGGTTTTCTTGGATATGGCTGTAATGGTTGAGGCACAGGGTGAGAAGATGGATGATATTGAACATCATGTGCTTCATGCTTCTCATTATGTTAAGGATGGAACTAAGAATCTTCACACTGCAAACAAGTATCAGAGAGGGAGTAGGAAGTGTATGTGCATTGGGGTCATACTTTTGCTCATTATCATTCTTGTCATTGTTATCCCAATTCTTACCAGTTTCAACAGTTCTTGA 951 0.4175 MNDLMTKSFTNYVDLKKAALKDEVDLEAGIPHHNLELTTSNPKLDVDMGLFLEEAEKVKAEMNTIRDILENLQQANEESKSLHKPEALKSLRNNINADIITVLKKAKSIKAQLEGMDKANAANRRLSGLKDGSPAIYRTRIAVTSGLRKKLKELMMEFQGLRQKMMTEYKDTVGRRYYTVTGEYPDEEVIEKIISNGDEEFLGKAIQEHGRGKVLETVVEIQDRYDAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLHTANKYQRGSRKCMCIGVILLLIIILVIVIPILTSFNSS* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1024 316 Gene3D - 214 313 - -
Lan8g1024 316 Pfam SNARE domain 255 306 IPR000727 -
Lan8g1024 316 ProSitePatterns Syntaxin / epimorphin family signature. 224 264 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lan8g1024 316 Coils Coil 52 82 - -
Lan8g1024 316 SMART tSNARE_6 213 280 IPR000727 -
Lan8g1024 316 SMART SynN_4 43 170 IPR006011 GO:0016020
Lan8g1024 316 Gene3D - 48 176 - -
Lan8g1024 316 Pfam Syntaxin 51 253 IPR006011 GO:0016020
Lan8g1024 316 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 5 309 - -
Lan8g1024 316 SUPERFAMILY t-snare proteins 45 273 IPR010989 GO:0016020|GO:0016192
Lan8g1024 316 CDD SNARE_syntaxin1-like 217 277 - -
Lan8g1024 316 CDD SynN 48 205 IPR006011 GO:0016020
Lan8g1024 316 PANTHER SYNTAXIN 5 309 IPR045242 -
Lan8g1024 316 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 218 280 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1024 Lan-Chr8 12217782 12218976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1024 1 316 SNARE and Associated Proteins AT1G08560 67.085 3.40e-135 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1024 K08486 - gmx:100816016 496.508