Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1005 ATGGCGAGGAAGCGAAATCGGCCACCTAATTCTACTCCATCTCAACAGCCACCACTCAAACTCCATCACCACGATTCAGAACAAGAATACCAAGAACAAGTAGAAGAAGAATCACAAGAAGATGCTGACGTGGCCCAATATATTAATCACACTGCTAACGTGTCATCCACGTCATCAATACCTGCCGAAGAAGACGACGATTCGATCAAGAAGCTTCTAGAACACTTAGGGAAGGACGAACTCGCCACCCTGCTCTGCGAAGTCGCCTCCAACCACCGCGACGTGGCGGACCAAATTCGTAAGGCGGCAAACTCTGATCCCTCACACCGGAAGGTCTTCGTTCACGGCCTCGGCTGGGATACCATCGCTGAAACCCTCACCGCCGCGTTCCGCCAGTACGGCGAGATTGAGGATTGCAAAGCCGTCACAGACAATGTCACGGGCAACTCCAACGGTTACGGCTTCATCCTTTTCAAGACCCGCTGTGGTGCCCGCAAAGCGCTCGAGCAGCCACAGAAGAAGGTAGGTAACCGCGTGATCTCATGCCAGCTGGCATCTCTCGGCCCTGTCCAACAGCAGCCCGATAATTTTGCGCAGCCGAATTATAATAATTTGGCTGCGCCTAATAAATCGGCTGCATTTAAAGTGCCAGTGGTGTCTGAATATACACAGAGGAAGATCTATGTGAGCAATGTGGGGAGCGAATTGGATCCACAGAGGTTGCTTTTGTTTTTCTCGAAGTTCGGGGAGATAGAGGAAGGACCTTTAGGGCTTAATAAGGTGACTAGGAAACCAAAGGGGTTTTGCTTATTTGTGTACAAGAGAGCAGAGAGTGCGAAGAGGGCATTGGAGGAGCCGCATAAGGCTTTCGAGGGCCGTGTTTTGCACTGCCGGCAAGCCATTGATTGTCCCAAGTCAAGGAAGCCACAAAAGCAACAACCTCAGAGGAAGGGGATGAAAGCTGCAGCCGCAACAGTAATGCAGTTTCAGAGAAGTGGTGGCAACTCTGGTTTTGTTACCGCGGGAGACATGCCAGGGCACTTGATGGCACCGGCTGGACCAGCGGTTGGGTTTAATCAGGGAGCTGCTGTATTGCCTGCGCAGACACTGGAATCGGCTCTTGGGCAGGCATATACGGCACTGCTTGCATCTCAGGGTGCTGGCTTGGGGCTGAATGGTTTGTTCGGAACACTAGGATCACAAGCAACAGTGAACCCTGGGGTCCCGGCTGTGGGTCATGGAATGCAGGTTGGGTATAATAACCAGGCAAATGTGAATCCAGGGGCTATTGGAGTATATGGGAATCAAGTAGGATTTCCGGGTGCATATCCAAACCAACAGGTGGGGCTTGGCTCTGGAAGAGGGCAGCAACAGCAGCAGTATAATGTTGGCCAATTCGGCGGTGTTGTCCCTTACACGGGGCCCTAG 1428 0.5217 MARKRNRPPNSTPSQQPPLKLHHHDSEQEYQEQVEEESQEDADVAQYINHTANVSSTSSIPAEEDDDSIKKLLEHLGKDELATLLCEVASNHRDVADQIRKAANSDPSHRKVFVHGLGWDTIAETLTAAFRQYGEIEDCKAVTDNVTGNSNGYGFILFKTRCGARKALEQPQKKVGNRVISCQLASLGPVQQQPDNFAQPNYNNLAAPNKSAAFKVPVVSEYTQRKIYVSNVGSELDPQRLLLFFSKFGEIEEGPLGLNKVTRKPKGFCLFVYKRAESAKRALEEPHKAFEGRVLHCRQAIDCPKSRKPQKQQPQRKGMKAAAATVMQFQRSGGNSGFVTAGDMPGHLMAPAGPAVGFNQGAAVLPAQTLESALGQAYTALLASQGAGLGLNGLFGTLGSQATVNPGVPAVGHGMQVGYNNQANVNPGAIGVYGNQVGFPGAYPNQQVGLGSGRGQQQQQYNVGQFGGVVPYTGP* 476
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1005 475 PANTHER GEO13361P1-RELATED 17 474 - -
Lan8g1005 475 PANTHER - 17 474 - -
Lan8g1005 475 SMART rrm1_1 226 298 IPR000504 GO:0003723
Lan8g1005 475 SMART rrm1_1 111 183 IPR000504 GO:0003723
Lan8g1005 475 MobiDBLite consensus disorder prediction 1 41 - -
Lan8g1005 475 Gene3D - 217 334 IPR012677 -
Lan8g1005 475 Gene3D - 20 195 IPR012677 -
Lan8g1005 475 CDD RRM_RBM24_RBM38_like 225 300 - -
Lan8g1005 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 308 IPR000504 GO:0003723
Lan8g1005 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Lan8g1005 475 SUPERFAMILY RNA-binding domain, RBD 101 196 IPR035979 GO:0003676
Lan8g1005 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 296 IPR000504 GO:0003723
Lan8g1005 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 180 IPR000504 GO:0003723
Lan8g1005 475 SUPERFAMILY RNA-binding domain, RBD 222 318 IPR035979 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lan8g1005 Lan-Chr8 11845137 11846978 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1005 224 304 C2H2 Transcription Factor Family AT2G19380 32.099 2.61e-07 51.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1005 K12741 - gmx:100784200 448.743