Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan8g0980 | ATGGGAAGACAACCATGTTGTGATAAGGTTGGTGTGAAGAGAGGTCCATGGACAATTGAGGAAGATCACAAGCTTATCAATTTCATTATCAATAATGGTATCCATTGTTGGAGAAAGGTTCCAAGCCTCGCAGGTTTGATAAGATGTGGAAAAAGCTGTAGATTGAGATGGATTAATTATTTAAGGCCAGACCTTAAGAGAGGTGGGTTTACAGAAATGGAAGAGAATCAAATTATACAACTACATTCACTTCTTGGTAACAGGTGGTCTAAGATTGCGGCACATTTTCCTGGAAGGACAGACAATGAAATCAAGAATCATTGGAACACAAGAATCAAGAAGAGATTGAGGTTCCTTGGTCTAGACCCTATGACCAAGAAGCCAATTCAACAAAATGAACATTTTGATGATGATGAAAAGAATAAGATTAACCAACATCCAAATACTTCAAAAGGGTATGAAGAAAATGTAGAGACCAAGTCCTTGGACAATAATGGCATTGAAGAGATGACAAAAACAAAAGAGAAAATAGAAGAAAAAGAAAATAAGGTAACTTGGGATAGTGAACTTCACAACTATGATATTCAAAGTTCTAAGGTTGAGTTGAAATCATGGATAAGCCAAGAAAACAACACAAGTGTTAGTTCTTATTGTAGTTCTTCTTTCTCTATTGGTGATTCTAGCTACCCTTGTGTGGGTCAATCCCCTTATTTTGAGGGGAACTCCCTACAACAATGGGTTGATAGTATGGATTCCATTCTCTTATGGGATAGCTTCAATCCACTTGATGAAGATTTTATCTTCTTGGAAAATAAGGAATAA | 822 | 0.3637 | MGRQPCCDKVGVKRGPWTIEEDHKLINFIINNGIHCWRKVPSLAGLIRCGKSCRLRWINYLRPDLKRGGFTEMEENQIIQLHSLLGNRWSKIAAHFPGRTDNEIKNHWNTRIKKRLRFLGLDPMTKKPIQQNEHFDDDEKNKINQHPNTSKGYEENVETKSLDNNGIEEMTKTKEKIEEKENKVTWDSELHNYDIQSSKVELKSWISQENNTSVSSYCSSSFSIGDSSYPCVGQSPYFEGNSLQQWVDSMDSILLWDSFNPLDEDFIFLENKE* | 274 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan8g0980 | 273 | SMART | sant | 66 | 114 | IPR001005 | - | |
| Lan8g0980 | 273 | SMART | sant | 13 | 63 | IPR001005 | - | |
| Lan8g0980 | 273 | Gene3D | - | 69 | 116 | - | - | |
| Lan8g0980 | 273 | ProSiteProfiles | Myb-like domain profile. | 62 | 112 | IPR001005 | - | |
| Lan8g0980 | 273 | CDD | SANT | 16 | 61 | IPR001005 | - | |
| Lan8g0980 | 273 | PANTHER | MYB DOMAIN PROTEIN 40 | 2 | 248 | - | - | |
| Lan8g0980 | 273 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 61 | IPR017930 | - | |
| Lan8g0980 | 273 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 62 | 116 | IPR017930 | - | |
| Lan8g0980 | 273 | Pfam | Myb-like DNA-binding domain | 67 | 110 | IPR001005 | - | |
| Lan8g0980 | 273 | Pfam | Myb-like DNA-binding domain | 14 | 61 | IPR001005 | - | |
| Lan8g0980 | 273 | Gene3D | - | 12 | 67 | - | - | |
| Lan8g0980 | 273 | CDD | SANT | 70 | 110 | IPR001005 | - | |
| Lan8g0980 | 273 | ProSiteProfiles | Myb-like domain profile. | 9 | 61 | IPR001005 | - | |
| Lan8g0980 | 273 | SUPERFAMILY | Homeodomain-like | 11 | 108 | IPR009057 | - | |
| Lan8g0980 | 273 | PANTHER | TRANSCRIPTION FACTOR MYB8-RELATED-RELATED | 2 | 248 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan8g0980 | Lan-Chr8 | 11561847 | 11563194 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan8g0980 | 1 | 160 | MYB Transcription Factor Family | AT5G16600 | 64.375 | 4.87e-74 | 227 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Lan8g0980 | Myb_DNA-binding | 5.9e-12 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan8g0980 | K09422 | - | gmx:100819471 | 398.282 |
Event-related genes