Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0972 ATGAATAATTCAGAGAAAGATGTTACATTGTTATTGAATCAAAACATTAAGGACAATGTTTTGCTTCAATCTAATGCCTCTAATGTTACATCTACACCAAAGCAACCATTTTTCATTGGTGTTGCTGGTGGAACTGCATCTGGGAAAACATCAGTGTGCAACAAGATAAACAACCATTTTCGTGATCAACATGTTGTTCTTATTAATCAAGACTCATTTTACTACTCTTTGAATGACAACATGGTACAGAAAGTTCATGAATATAACTTTGATCATCCTGATGCCTTTGATACAGAGCTTATGCTTTCATCTATGGAGAAATTAAAACTTGGACAAGCTGTTACCATACCGAATTACGATTTTAACCGGCATAAGAGAGCTGAACCTGGATGTAAGGTTAATCCTGCAGATATAATAGTTTTCGAAGGGATACTAGTTCTTCATGATTCTCGTGTTCGCGATCTTTTGAACATGAAGATATTTGTTGATGAAGATTCGGATGTGCGCCTTGCACGGAGGATTCAACGTCTAGCTATTGAACGTGGCAGGAACATTCAGAATGTTTTAGATCAATATTCCAGATTTGTAAAGCTCAGTTTCGAAGAATTTGTACTGCCAACGAAAAAATATGCGGATATTATCATTCCGGGCGGCGGAGATAATGAAGTTGCCATTGATTTGATTGTGCAAAATATCCGTATGAAGCTTGGCCAGCATGATCTTTGTAAAATATATCCAAATATTTTTGTAATGCTTGCAACATTTCAGATTAAGGGAATGCATACCCTCATCCGCGACGTTAGAACAACAAAACATGACTTCGTGTTTTACTCCGACCGCCTTATTCGGCTGGTTGTTGAGCATGGGCTTGGTCACCTTCCTTTTACTGAAAAACAAGTCAAAACTCCAACAGGATGTGTATACCCTGGTGTAATTTTCTGTAGCAGGCTTTGTGGAGTATCAGTGATTAGAAGTGGAGAAAGCATGGAAAATGCATTAAGAGCATGTTGCAAGGGAATCAAAATAGGTAAAATCCTTATTCATGGACAAGGCACAAATGGAAGACAGTTAATCTATGAGAAGCTACCAAAAGACATTGCAAGCCGTCATGTGTTGCTACTTGATCCAGTTCTGGCCACAGGAAATTCTGCTGTCAAGGCTATCTCTCTACTAGTCAAGAAGGGTGTACCAGAATCCAATATCATCTTTCTAAATCTAATAGCAGCACCACAGGGAATACATGAAGTATGCAAAAGATTTCCCATGATGAAGCTTGTGACATCAGAGATTGATGCATCATTAAATGAGAATTCTCGTGTTATCCCTGGCTTGGGAGAATTTGGTGATCGTTACTTTGCCACTGATGATGACTAA 1374 0.3843 MNNSEKDVTLLLNQNIKDNVLLQSNASNVTSTPKQPFFIGVAGGTASGKTSVCNKINNHFRDQHVVLINQDSFYYSLNDNMVQKVHEYNFDHPDAFDTELMLSSMEKLKLGQAVTIPNYDFNRHKRAEPGCKVNPADIIVFEGILVLHDSRVRDLLNMKIFVDEDSDVRLARRIQRLAIERGRNIQNVLDQYSRFVKLSFEEFVLPTKKYADIIIPGGGDNEVAIDLIVQNIRMKLGQHDLCKIYPNIFVMLATFQIKGMHTLIRDVRTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVKTPTGCVYPGVIFCSRLCGVSVIRSGESMENALRACCKGIKIGKILIHGQGTNGRQLIYEKLPKDIASRHVLLLDPVLATGNSAVKAISLLVKKGVPESNIIFLNLIAAPQGIHEVCKRFPMMKLVTSEIDASLNENSRVIPGLGEFGDRYFATDDD* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0972 457 Gene3D - 32 238 IPR027417 -
Lan8g0972 457 Pfam Phosphoribulokinase / Uridine kinase family 38 223 IPR006083 GO:0005524|GO:0016301
Lan8g0972 457 TIGRFAM udk: uridine kinase 36 235 IPR000764 -
Lan8g0972 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 228 IPR027417 -
Lan8g0972 457 PRINTS Uridine kinase signature 36 53 - -
Lan8g0972 457 PRINTS Uridine kinase signature 66 77 - -
Lan8g0972 457 PRINTS Uridine kinase signature 111 126 - -
Lan8g0972 457 PRINTS Uridine kinase signature 167 177 - -
Lan8g0972 457 PRINTS Uridine kinase signature 181 192 - -
Lan8g0972 457 PRINTS Uridine kinase signature 203 216 - -
Lan8g0972 457 Gene3D - 239 454 IPR029057 -
Lan8g0972 457 PANTHER URIDINE KINASE 19 452 - -
Lan8g0972 457 CDD UMPK 38 233 IPR000764 -
Lan8g0972 457 Pfam Uracil phosphoribosyltransferase 253 454 - -
Lan8g0972 457 PANTHER URIDINE KINASE-LIKE PROTEIN 5 19 452 - -
Lan8g0972 457 SUPERFAMILY PRTase-like 238 454 IPR029057 -
Lan8g0972 457 CDD PRTases_typeI 317 427 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0972 Lan-Chr8 11514913 11518958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0972 22 457 PRT Gene Family AT4G26510 72.477 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0972 K00876 - csin:114323087 684.1