Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0947 ATGTTTGCTTGTCCAATGGAAGATATGGAAAGTGTGGTGGCAACAGTGAGTGGCTACCATGGATCGGAGCGACGCAATCTCATCAAGATGATTTCGCATGCTGGTGCCAATTATGTTGGGAGGATGATGCCAAATTCAATCACTCACGTGGTTTGTTGGAAATTTGAAGGAAAAAAATTTGATATTGCCCAAAAGTTCAACATAATTGTAGTCAACCACCGATGGATTGAAGACTGTATAAAGGAAGGAAGGCGTGTACCAGAAGATTCTTATGTCTGGCAAAGTGGTCATGAAGTAGGGCCACTTTTACTGAAAGTTCCTCCACCCACTGTTCAAGCAAATAACTTGAGAAAGAAGAAAGTGATTAATGACAGATCATGTGATACTGGCTCTGAAAAGCAGACAACTGAGTTAAGTTCTGGAGCATCTGGAAATTCTGTTTGGGAAGATTTTCTAATGAACAAGCATGAGGAGTCAAGTTCTAATTCTTCTAGACGATCACGAAAACAAAAAAGAAATATCTGCAATGATCATGGAGTTAGTAATGTGGCTGGACCTTCTCGTAAAGGAAGAAGGACTGCAAGAAATATTGTAGATGAAGCGGCCTTGGATACTGTCATTTTAGATTTAACCCGGGAGGAGGACCACCTTAGCAGAGTGAATAGACTACAAACTGATGCTGCAGCTACCTCTAGCCCTTCTGTTGGTGTCAATAACGAAAAAAATCCTGAAAATAGAGAAGGTGCAGAGGCTGGATTGCATAATCAAAGTGGAACTGTGAATATAGCTTCAAATGGCATTGAACAGATAAAAGATTCAAATAATGTATCTACCAATAGGAATTCAATTTTGTTTGAAGAGGATCCTTTACCTATAGGGCAAACGTCAGTATGTTCTGGTGCTGAGAGTATCCCAGATGGTGATCAGATTGATAATGTTGGACCATTGCCTACTTCAAAAGAGTTGTCATGTGTTATATGTTTCGAAGAGTACAGCTCAACAAGGGGGATCTTGCCGTGTGGACATAGGTATTGTTATCAATGCATTCAGAGTTGGGTCGATCGTAGGACTTCAATGGGAAAAAGTTCAACCTGCCCTTTGTGCAAGGCAAGTTTTGTAATGTTCAAGAAAGTTGAGCATGCAGTCACTGCTGATCAAAAAGTATATTCCCAGACAATCCCATCTGGCGATTCAACCTCAGATATTTTCATAAACACAGTTCAAGAATTTCCCCATTATGGTTCTGAGTCAAGTGCTTGTGTAGTTTGTCGTGGTAGGGAACCTGAGGATCTGCTCCAGAGTTGCGATGTTTGCCAACACCGAAGAATCCATTTGTATTGCCTGGACCCTCCTTTACTGCCATGGACATGCAGTCACTGCAAGGATCTTAGGAGGCTTTACCATCATCACTCGTATTAG 1419 0.413 MFACPMEDMESVVATVSGYHGSERRNLIKMISHAGANYVGRMMPNSITHVVCWKFEGKKFDIAQKFNIIVVNHRWIEDCIKEGRRVPEDSYVWQSGHEVGPLLLKVPPPTVQANNLRKKKVINDRSCDTGSEKQTTELSSGASGNSVWEDFLMNKHEESSSNSSRRSRKQKRNICNDHGVSNVAGPSRKGRRTARNIVDEAALDTVILDLTREEDHLSRVNRLQTDAAATSSPSVGVNNEKNPENREGAEAGLHNQSGTVNIASNGIEQIKDSNNVSTNRNSILFEEDPLPIGQTSVCSGAESIPDGDQIDNVGPLPTSKELSCVICFEEYSSTRGILPCGHRYCYQCIQSWVDRRTSMGKSSTCPLCKASFVMFKKVEHAVTADQKVYSQTIPSGDSTSDIFINTVQEFPHYGSESSACVVCRGREPEDLLQSCDVCQHRRIHLYCLDPPLLPWTCSHCKDLRRLYHHHSY* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0947 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 462 IPR013083 -
Lan8g0947 472 Pfam twin BRCT domain 12 75 IPR001357 -
Lan8g0947 472 ProSitePatterns Zinc finger RING-type signature. 340 349 IPR017907 -
Lan8g0947 472 MobiDBLite consensus disorder prediction 124 143 - -
Lan8g0947 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 389 IPR013083 -
Lan8g0947 472 SUPERFAMILY BRCT domain 9 94 IPR036420 -
Lan8g0947 472 Pfam Zinc finger, C3HC4 type (RING finger) 324 368 IPR018957 GO:0046872
Lan8g0947 472 MobiDBLite consensus disorder prediction 224 246 - -
Lan8g0947 472 SMART ring_2 324 368 IPR001841 -
Lan8g0947 472 SMART ring_2 420 460 IPR001841 -
Lan8g0947 472 MobiDBLite consensus disorder prediction 156 195 - -
Lan8g0947 472 SUPERFAMILY RING/U-box 316 375 - -
Lan8g0947 472 MobiDBLite consensus disorder prediction 224 241 - -
Lan8g0947 472 Gene3D BRCT domain 5 98 IPR036420 -
Lan8g0947 472 ProSiteProfiles Zinc finger RING-type profile. 324 369 IPR001841 -
Lan8g0947 472 PANTHER F5A8.9 PROTEIN 154 469 - -
Lan8g0947 472 PANTHER F5A8.9 PROTEIN 5 155 - -
Lan8g0947 472 ProSiteProfiles BRCT domain profile. 9 93 IPR001357 -
Lan8g0947 472 SMART BRCT_7 6 83 IPR001357 -
Lan8g0947 472 SUPERFAMILY FYVE/PHD zinc finger 408 462 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0947 Lan-Chr8 11196902 11202382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0947 30 99 Core DNA Replication Machinery Family AT4G02110 39.437 1.03e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0947 - - vra:106765083 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0947 8 11196902 11202382 Lan20g1354 20 20257761 20263326 LSH