Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0932 ATGGGTAGGGGAAGAGTTGAGTTGAAAAGGATAGAGAACAAGATAAACAGACAAGTAACATTTGCAAAGAGAAGGAATGGACTTTTGAAGAAAGCTTATGAACTTTCTGTTCTCTGTGATGCTGAGGTTGCACTTATCATCTTCTCTACCCGTGGCAAACTTTATGAGTTTTGTAGCTGCACTTCTGGAATGCTGAAAACACTTGAAAGGTATCAAAAGTGCAGCTATGGTGCAGTTGAAGTCAACAAACCTTCCAAAGAGCTTGAGAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAGTCTCTTCAAAGAACCCAGAGAAACCTTCTAGGTGAAGACTTGGGGCCATTAAATACCAAAGATCTTGAGCAGCTTGAAAGGCAACTGGATTCATCTCTCAAACATGTCAGGTCCACTAAGACCCAATTCATGCTGGACCAGTTATCTGATCTTCAAAACAAGGAACAGATGCTGGTAGAAGCAAACAGAGGTTTGACCATGAAGCTGGAAGAAATAAATTCAAGAAACCAATATAGACAATGGGAAGATGCTGAACAAAGTATGCAATATGGTGCACAGAATCCTCACTCTCAAGGCTTCTTCCAACCATTGGAATGCAATCCAACATTGCAGATAGGTACTGATTACAGGTACAATTCTGTAGCCTCAGATCAGTTAACTGCAGCAACACAAGGTCAACAAGTGAATGGGTTTATACCTGGATGGATGCTATGA 744 0.4126 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSCTSGMLKTLERYQKCSYGAVEVNKPSKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKDLEQLERQLDSSLKHVRSTKTQFMLDQLSDLQNKEQMLVEANRGLTMKLEEINSRNQYRQWEDAEQSMQYGAQNPHSQGFFQPLECNPTLQIGTDYRYNSVASDQLTAATQGQQVNGFIPGWML* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0932 247 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Lan8g0932 247 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Lan8g0932 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan8g0932 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan8g0932 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan8g0932 247 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan8g0932 247 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lan8g0932 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan8g0932 247 PANTHER MADS BOX PROTEIN 1 232 - -
Lan8g0932 247 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 232 - -
Lan8g0932 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan8g0932 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan8g0932 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan8g0932 247 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan8g0932 247 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0932 Lan-Chr8 11068289 11074533 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0932 1 247 MADS-box Gene Family AT5G15800 71.863 3.80e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan8g0932 K-box 5.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0932 K09264 - gmx:100785322 437.958