Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0931 ATGGGAAGAGGAAGAGTTCAACTGAAGCAGATCGAGAACAAAACAAGTCGTCAAGTAACATTTTCAAAGAGAAGATCTGGGCTGAGGAAAAAAGCACATGAAATTTCTGTGCTTTGTGATGCTCAAGTTGCATTCATTGTCTTCAACAACAAAGGCAAACTTTTTGAGTTTTCTTCTGAATCCAGCATGAAAATCATTCTGGAGCGGTATGAGAGACATGGCCATGAAGCACAAATTGATGGTGCTAATATTGAATCACAGGGAAACTGGTCCTTGGATTGCTTCAAGCTCAACAACAAAGTTGAAGTGTTGGAGAGGAATTTAAGAAACTATGTTGGACATGATCTGGATCCCTTGAACTTGAGAGAACTTCAGAGTTTGGAACAACAACTTGACATGGCTCTAAAGCGCATCCGAACAAAAAAGAACCAAGTTATAAATGAATCTATCTCTGAGCTTCAGAAAAAGGCAAGGCTATTGCATGATCAAAACAACAATGTAGCAAATAAGATTAAAGAGCAAGAGAAGATAGTGGGTGAAAATCAACAATGTTGGCCACAAACCCTTTACCCAAATTCTTCAACCTTCAACTTATGTTCACCACAAAGATTGGTTCCTTCTCTAACACTTGGATTATAA 639 0.3834 MGRGRVQLKQIENKTSRQVTFSKRRSGLRKKAHEISVLCDAQVAFIVFNNKGKLFEFSSESSMKIILERYERHGHEAQIDGANIESQGNWSLDCFKLNNKVEVLERNLRNYVGHDLDPLNLRELQSLEQQLDMALKRIRTKKNQVINESISELQKKARLLHDQNNNVANKIKEQEKIVGENQQCWPQTLYPNSSTFNLCSPQRLVPSLTLGL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0931 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan8g0931 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan8g0931 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan8g0931 212 Coils Coil 150 170 - -
Lan8g0931 212 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Lan8g0931 212 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 211 - -
Lan8g0931 212 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Lan8g0931 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan8g0931 212 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Lan8g0931 212 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan8g0931 212 Coils Coil 124 144 - -
Lan8g0931 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan8g0931 212 PANTHER MADS BOX PROTEIN 1 211 - -
Lan8g0931 212 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan8g0931 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0931 Lan-Chr8 11056765 11063306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0931 1 184 MADS-box Gene Family AT1G26310 55.319 2.55e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan8g0931 K-box 1.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0931 K09264 - gmx:100787971 286.96