Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0921 ATGGCAACTGCAAAGACTGTGAAGGATGTCTCACCTCATGAGTTTGTCAAAGCTTATTCTGCTCACCTTAAGCGTTCTGGAAAGATTGAGCTGCCAGAGTGGACAGATATTGTGAAAACGGCCAAGTTTAAGGAGCTGCCCCCCTATGACCCCGATTGGTATTACATTAGGGCTGCATCCATGGCAAGAAAGATATACTTGAGGGGTGGACTAGGTGTTGGTGCTTTTAGGAGGATCTATGGTGGAAGCAAGAGTAACGGAAGCCGCCCCTCACATTTCTGCAAGAGCAGCGGTGGTATTGCAAGACACATCCTGCAACAGTTGGAAATCGTGAAAATTGTTGAGATCGATCCCAAAGGAGGTAGGAGAATCACCTCTAACGGTAGAAGGGATCTCGATCAAGTTGCTGGGAGAATCATTATCGCCCCTTGA 432 0.4745 MATAKTVKDVSPHEFVKAYSAHLKRSGKIELPEWTDIVKTAKFKELPPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKSNGSRPSHFCKSSGGIARHILQQLEIVKIVEIDPKGGRRITSNGRRDLDQVAGRIIIAP* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0921 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lan8g0921 143 PANTHER 40S RIBOSOMAL PROTEIN S19-3 3 142 - -
Lan8g0921 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Lan8g0921 143 PANTHER 40S RIBOSOMAL PROTEIN S19 3 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lan8g0921 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lan8g0921 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 140 IPR036390 -
Lan8g0921 143 Gene3D - 1 141 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0921 Lan-Chr8 10943414 10945424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0921 1 143 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 85.315 7.97e-91 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0921 K02966 - fve:101297360 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0127 5 1633122 1636673 Lan8g0921 8 10943414 10945424 LSH
Lan8g0921 8 10943414 10945424 Lan20g1302 20 19579941 19581525 LSH