Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0915 ATGTCTTCTTCAAGACCCCAACGAACTCCACAAGAAGTTGAAGACATAATCATCAGAAAAATCTTCCTCGTTTCAATCACTCCTCTTCCAATCCCTAACCCCGATCCTCGATTACTTTACTTGGAATTAACCGCTGCTGAAATTCTCAGCGAAGGTCACAATCTCATTCTCTCTCGCGATTTCATGGAAAGGGTTTTAATCGATCGAATCTCCGGTGATTTCTCCACCACCACCACCACCGCCGCCGCTGAATCCACCTTCCACTACCTCCTTGGTTGTTACAACCGTGCTCATGATGAATCGAAGAAAATCGTTAACATGAGAGATAAGAATATTAGGTCAGAGATGGAGGTTGTGGTGAAACAGGCGAAGAGACTTTGTGTTTCGTATTGTAGGATTCATTTGGCTAATCCTGAACTGTTTCCGAGCGGGAATTCGAGTTCAGGAGGTGGTGGTGGTTCGCCGTTGTTGCCGCTGATTTTTGCCGAGGTTGGTGGTGGGAGCATTGATGGATTTGGTACTGGTGGAGGAGTGAAGGCTCCGCCTGGGTTTTTGGAAGAGTTTTTTAGGGAATCGGATTTCGATAGCTTGGACCCGATTTTGAAAGGGTTGTATGAGGAGTTGAGAGGGAGTGTGATGAAGGTTTCAGCTCTTGGGAATTTCCAAGATTCTTTGAGGGCTTTGATTTATTTGGTTAGGTTTCCAATTGGCGCAAAATCGCTTGTTAGCCATGATTGGTGGATTCCTAAAGGGGTTTATATGAATGGGCGTGCCATTGAGGTTACAAGCATCTTGGGACCCTTTTTTCACATCAGTGCCCTTCCTGATCAGACCATTTTCAAGAGCCAGCCTGACATAGGGCAGCAGTGCTTTTCTGATGCATCTACTCGACGGCCAGCTGATTTGTTATCTTCATTCTCCACAATCAAAACTGTTATGAATAGCTTATATGATGGCCTAGCTGAAGTTCTCCTCACCCTCCTTAAAAGTACAGATACTCGTGAAAGTGCACTTGAGTTTCTTGCGGCAGTGATCAATATAAATGCTTCTAGGGCTCATATACAGGTTGATCCTATAGCTTGTGCGAGTTCGGGCATGTTTGTAAATCTCAGTGCTGTCATGCTTCGTCTCTGTGAGCCATTTTTAAATGCAAATTTATCTAAAAGGGATAAAATTGATGCAAAATATGTACACCACTCAAACCGTTTGAAGCTAAGTGAGTTGACTGCTCTTCATGCATCATCAGAAGAAATTACTGAGTGGCTTAATAGTAATAAACCAGCTAAGGCTGGGGGAATCAATCAATCTAGTGATGGTCAAAAACGCTTGCAACAATCACAAGAAGCCACTAGTTCTGGTAGTAATAATGCTTCTGAGGTTTCAAATGAAAATGCTGCACATGGTGAAAGGACGAAATATACATTTATTTGTGAATGCTTCTTTATGACCGCAAGAGTGCTCAACTTAGGCCTTTTAAAAGCGTTTTCAGACTTCAAACACTTAGCTCAGGATATTTCAAGGTCTGAAGATGCTCTTTCCACTCTTAAAGCCATGCGGGAGCAGTCACCATCTCCTCAGTTGGAATTGGATATATCTCGGCTTGAGAAAGAAATGGAGTTGTATTCGCAGGAAAAGCTTTGCTATGAAGCTCAGATATTAAGGGATAACACTTTCATTCAGAATGCACTTTCCTTCTATCGCTTGATGATTGTTTGGTTGGCTGGCTTGGTTGATGGGTTTAAGATGCCCTTACCACCAACGTGCCCAATGACATTTGCCACCATGCCTGAGCATTTTGTAGAAGATGCCATGGAACTTTTGATATTTGCTTCCCGGATTCCAAAGGCCTTAGATGGAGTCGTGCTGGATGAGTTTATGAACTTCATAATCATGTTCATGGGCAGCCCTGAATTTGTCAAAAATCCATATCTGAGAGCAAAGATGGTTGAAGTCTTAAATTGCTGGATGCCTCGTAGGAGCGGCTCGTCTGCTACAGCTACTCTATTTGAAGGGCACCAGCTTTCTCTGGAGTATCTTGTGAGGAATCTTCTTAAACTTTATGTGGACATTGAGTTCACAGGTTCTCACACACAGTTCTATGACAAGTTTAATATTCGTCATAATATTGCTGAACTCCTTGAATACCTGTGGCAAGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAAGAAGAAGAAAAGGGTGTCTATCTGAACTTCTTAAACTTTCTGATTAATGATAGTATTTATCTTCTTGATGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAGGCTGAGATGTCTAATACGGCTGAATGGGAGCGGCGGCCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGGATAGATATGAAGTTAGCAAATGAAGATGTCAGCATGCTAGCATTTACTTCAGAGCAGATTACTGTTCCGTTCCTACTTCCTGAGATGGTTGAAAGAGTGGCTAGCATGCTCAATTACTTTCTGCTGCAACTGGTGGGTCCCCAAAGAAAATCACTTAGTCTGAAAGATCCTGAGAAATATGAGTTTCGTCCAAAACATTTGCTGAAACAGATCGTGCACATATATGTTCATCTGGCTAGAGGTGATACAAATTCTATCTTCCCAGCTGCCATCTCAAGGGATGGTCGATCGTACAATGATCAGTTGTTTAATGCCGCAGCAGATGTCCTTCGTAGAATAGGCGAGGATGGGAGAATTATACAGGAATTTATTCAACTTGGTGCTAAAGCAAAAGTTGCAGCTTCAGAGGCCATGGATGCTGAAGCTACTCTGGGAGAAATACCAGATGAATTCCTTGACCCAATTCAATACACATTGATGAAGGACCCGGTTATTTTACCTTCTTCGAGGATCACAGTTGATCGTCCTGTCATTCAGAGGCATCTTCTCAGTGATAGTTCTGATCCATTCAACCGATCTCATCTCACGGCGGACATGCTGATTCCGGATAATGAACTAAAAGCAAGAATCGAGGAGTTCATAAGGTCCCAGCAAATGAAGAAACATAATGAAGGTCTGAACATACAGAGTAGTACCAAGGAAGCTATTCAGACCACCTATGGTGACATGTTGATTGATTAG 3138 0.4257 MSSSRPQRTPQEVEDIIIRKIFLVSITPLPIPNPDPRLLYLELTAAEILSEGHNLILSRDFMERVLIDRISGDFSTTTTTAAAESTFHYLLGCYNRAHDESKKIVNMRDKNIRSEMEVVVKQAKRLCVSYCRIHLANPELFPSGNSSSGGGGGSPLLPLIFAEVGGGSIDGFGTGGGVKAPPGFLEEFFRESDFDSLDPILKGLYEELRGSVMKVSALGNFQDSLRALIYLVRFPIGAKSLVSHDWWIPKGVYMNGRAIEVTSILGPFFHISALPDQTIFKSQPDIGQQCFSDASTRRPADLLSSFSTIKTVMNSLYDGLAEVLLTLLKSTDTRESALEFLAAVININASRAHIQVDPIACASSGMFVNLSAVMLRLCEPFLNANLSKRDKIDAKYVHHSNRLKLSELTALHASSEEITEWLNSNKPAKAGGINQSSDGQKRLQQSQEATSSGSNNASEVSNENAAHGERTKYTFICECFFMTARVLNLGLLKAFSDFKHLAQDISRSEDALSTLKAMREQSPSPQLELDISRLEKEMELYSQEKLCYEAQILRDNTFIQNALSFYRLMIVWLAGLVDGFKMPLPPTCPMTFATMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMGSPEFVKNPYLRAKMVEVLNCWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITVPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTNSIFPAAISRDGRSYNDQLFNAAADVLRRIGEDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSSDPFNRSHLTADMLIPDNELKARIEEFIRSQQMKKHNEGLNIQSSTKEAIQTTYGDMLID* 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0915 1045 ProSiteProfiles U-box domain profile. 945 1019 IPR003613 GO:0004842|GO:0016567
Lan8g0915 1045 MobiDBLite consensus disorder prediction 429 465 - -
Lan8g0915 1045 Coils Coil 524 551 - -
Lan8g0915 1045 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 945 1024 IPR013083 -
Lan8g0915 1045 Pfam U-box domain 946 1017 IPR003613 GO:0004842|GO:0016567
Lan8g0915 1045 PANTHER UBIQUITINATION FACTOR E4 1 1021 IPR045132 GO:0000151|GO:0030433|GO:0034450
Lan8g0915 1045 Pfam Ubiquitin elongating factor core 265 929 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Lan8g0915 1045 CDD RING-Ubox_UBE4A 948 1017 - -
Lan8g0915 1045 PANTHER - 1 1021 - -
Lan8g0915 1045 SUPERFAMILY RING/U-box 938 1018 - -
Lan8g0915 1045 SMART Ubox_2 949 1012 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0915 1 1045 U-box Gene Family AT5G15400 76.281 0.0 1648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0915 K10597 - gmx:100806175 1749.56