Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0910 ATGGGTTGCATTAGCTCCAAGAATGTGGTTGCAAGAAGAGATTCTTCACTTCCTATTATTGATGATCATCATAGTGTTTCTGGAACAATCATAGAGAGTCATCATTCTCATCATTATAATCATAGTAATCCTGGTTCAAGGGCTCATTCAGGGTCAGTGGTTTTATCTTCAGAGGAAAAGAAGAAGTTGAAGAAGAATAGCTCAAGGAAAAGTAATGGTTCTTTCAGTTTCAGGATTGGGTTGTTTTCAAATCATAGGTATGTGGATGCAGAACAAAATGCTGCAGGGTGGCCACCATGGTTAACAGCTTCTGCTGCTGAAGCTATTCAAGGATGGATCCCTCTCAAAGCTGATTCTTTTCAAAAGTTGGATAAGATTGGACAAGGTACATATAGCAGTGTGTTCCAAGCCAGGGAAGTTGAAAGTGGGAGAATGTTTGCTCTGAAGAAAGTGAGGTTTGACAATTTACAACCTGAGAGCATTAGATTCATGGCAAGAGAAATAACAATTCTTCGTCGGCTTGATCATCCAAACATAATGAAATTGGAGGGTATAATTACTTCAAGACAATCAAACAGCATATACCTTGTATTTGAATACATGGAGCACGATCTTGCCGGTCTAGTTTCGCGCCCTGACATCATGTTCACTGACTCTCAGATAAAATGTTACATGAGGCAGTTATTAAGTGGAATCGAGCATTGTCACGTACGGGGTATTATGCATCGAGATATTAAAGTATCAAATATCTTAGTGAATAATGATGGTATTCTCAAGATAGCAGATTTCGGATTAGCAAATACAATTAGCCCAAATAACAAGCATCCTTTAACGAGTCGTGTAGTAACTCTATGGTATCGCCCTCCTGAGCTCTTGATGGGATCGACCAATTATGGAGTATCAGTCGATCTGTGGAGTGTAGGCTGTGTATTTGCAGAACTTTATCTCGGGAAGCCTATCCTTAAGGGGAGAACTGAGGTTGAACAACTGCACAAAATTTTTAAGCTTTGTGGTACTCCATCTGATGAATACTGGAAAAGAATTAAGCTTCCTCATGCAACAATGTTTAAACCTCAGACAACTTACGAAAGCTCTCTCCGGGAGAGGTGTGCGGATTTTCCTGAAACCGCTGTAAGCCTACTCGAGACTTTTCTGTCCATTGACCCTTACAAGCGTGGTACTGCCTCCTCCGCCCTCATGTCTGAGTATTTCAATACCATGCCATATGCCTGTAGTCCATCAAACCTGCCGAAGTATCCGCCTAGCAAAGAAATGGATGCTAAAAATCGGGGAGATGCATCCAGGAAAAAAACGGGAAGTAAAATGCGAGAGTCTGCAACATCAAGAAGGCAGCAACGACGAGTCTATAAGGTTTCTCAAGAACCGAAGAACTTTCATAAAACAGCCTCAAAAGAGAACATTCCTGAAAATTCCGACATGGATGATCGTAAAGGACATCTTACAAAGGGAAAAGCAGGAACTATGCACAAAGAGCAACCGAAGCATTCAGTGGATACAATGTCAGAGGCTTCTCAAAATATGAACATTGCTATGAATGGTATGGGCTATAGTGTACACTCAGGACAAGTGCAAGCCCCGGGATCTAGCGGTTTTACATGGGCAAAAAGGAGAAAACCAGATGTTTCGTCCACACTATCCGATGGCGAAAGAAGCAAGATTAGCGCCCTGGATCCAAACTTTGCGAAAGGCACATACGACTTGACAAGACAAGCGATCTTGGAACGAAAATATAACGAGAATCATGCTCATCGGGATGAGACTTCAAGGCATGTACTACAAAAGCACCAGGCTCAACACGGTCAACAGAAGGTACAAATGGATTTCGATCCCTCGGAACTGCTAAATCCGCAGGGCTACAAAGAATATAGTGGACATTGGAATGAAAATGGTCTGCGGCATGGTATATCAAGGTTTGGAAGAGACAAATGA 1950 0.4195 MGCISSKNVVARRDSSLPIIDDHHSVSGTIIESHHSHHYNHSNPGSRAHSGSVVLSSEEKKKLKKNSSRKSNGSFSFRIGLFSNHRYVDAEQNAAGWPPWLTASAAEAIQGWIPLKADSFQKLDKIGQGTYSSVFQAREVESGRMFALKKVRFDNLQPESIRFMAREITILRRLDHPNIMKLEGIITSRQSNSIYLVFEYMEHDLAGLVSRPDIMFTDSQIKCYMRQLLSGIEHCHVRGIMHRDIKVSNILVNNDGILKIADFGLANTISPNNKHPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELYLGKPILKGRTEVEQLHKIFKLCGTPSDEYWKRIKLPHATMFKPQTTYESSLRERCADFPETAVSLLETFLSIDPYKRGTASSALMSEYFNTMPYACSPSNLPKYPPSKEMDAKNRGDASRKKTGSKMRESATSRRQQRRVYKVSQEPKNFHKTASKENIPENSDMDDRKGHLTKGKAGTMHKEQPKHSVDTMSEASQNMNIAMNGMGYSVHSGQVQAPGSSGFTWAKRRKPDVSSTLSDGERSKISALDPNFAKGTYDLTRQAILERKYNENHAHRDETSRHVLQKHQAQHGQQKVQMDFDPSELLNPQGYKEYSGHWNENGLRHGISRFGRDK* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0910 649 MobiDBLite consensus disorder prediction 415 503 - -
Lan8g0910 649 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Lan8g0910 649 CDD STKc_CDK9_like 120 404 - -
Lan8g0910 649 Pfam Protein kinase domain 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g0910 649 Gene3D Phosphorylase Kinase; domain 1 107 202 - -
Lan8g0910 649 Gene3D Transferase(Phosphotransferase) domain 1 203 444 - -
Lan8g0910 649 SUPERFAMILY Protein kinase-like (PK-like) 114 409 IPR011009 -
Lan8g0910 649 ProSiteProfiles Protein kinase domain profile. 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g0910 649 MobiDBLite consensus disorder prediction 35 71 - -
Lan8g0910 649 MobiDBLite consensus disorder prediction 423 503 - -
Lan8g0910 649 MobiDBLite consensus disorder prediction 588 610 - -
Lan8g0910 649 SMART serkin_6 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g0910 649 PANTHER CELL DIVISION PROTEIN KINASE 45 579 - -
Lan8g0910 649 PANTHER CYCLIN-DEPENDENT KINASE 45 579 - -
Lan8g0910 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0910 Lan-Chr8 10860023 10865788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0910 112 444 Core Cell Cycle Gene Families AT5G10270 46.418 4.84e-106 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lan8g0910 Pkinase 2.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0910 - - lang:109347355 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0111 5 1320639 1326050 Lan8g0910 8 10860023 10865788 LSH
Lan8g0910 8 10860023 10865788 Lan20g1290 20 19470389 19475829 LSH