Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0903 ATGTCTAGCAGAAAGTCAAGGCATCAATCAGCAGGGTCAACAAGAATATCTGATGATCAAATCATTGATCTTGTTTCAAAGTTGCGTCAACTTGTTCCTGAGATTAACCACAGGCGCTCTGATAAGGTATCAGCCTCTAAGGTCCTACAAGAAACATGCAACTACATAAGAAACTTGCACAGAGAGGTTGATGACTTAAGTGAACGGTTGTCTCAATTGTTGAACACAATTGATTCTAATAGTGCTGAGGCTTCTATCATTAGGAGCCTTATTAACCAATAA 282 0.3901 MSSRKSRHQSAGSTRISDDQIIDLVSKLRQLVPEINHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLNTIDSNSAEASIIRSLINQ* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0903 93 CDD bHLH_AtPRE_like 10 76 - -
Lan8g0903 93 Pfam Helix-loop-helix DNA-binding domain 20 59 IPR011598 GO:0046983
Lan8g0903 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Lan8g0903 93 PANTHER TRANSCRIPTION REGULATOR 1 91 - -
Lan8g0903 93 Gene3D - 1 89 IPR036638 GO:0046983
Lan8g0903 93 Coils Coil 56 83 - -
Lan8g0903 93 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Lan8g0903 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 81 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0903 Lan-Chr8 10737393 10739580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0903 13 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 73.750 3.89e-37 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan8g0903 HLH 3.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0903 - - gmx:100794486 148.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0087 5 1037761 1039539 Lan8g0903 8 10737393 10739580 LSH
Lan8g0903 8 10737393 10739580 Lan20g1248 20 18313906 18315887 LSH
Lan8g0903 8 10737393 10739580 Lan8g0128 8 2052256 2057777 PCT
Lan8g0128 8 2052256 2057777 Lan8g0903 8 10737393 10739580 PCT