Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0895 ATGAGGACAATAATGGTTGGAAGTGTAACTAAGGTTTGTTTCATTGTGTTGGTTACTTTAGCCATTGTTATTCCATGCCTTGAGGCTGGAATTGCTGAGTTTGATGATTATCTTAAAGCTCAAGCTGAAGAAGCTCGTAAACTCACTCTTGAAACCTATGTGCCAAACCCTGAAGAAATCACTGAAGATCTCAATCTTCATGTTCATAAGGCATTGCAAGAGTATGAGAATGAGTCAACAAACAGCACAACAAGAAGGGAATTAAGGCAAGGTAGAAAACATAGAGGACCATGCCAAGCCACCAACCCCATTGATAGATGCTGGAGGTGTCAAGCAAACTGGGCCAATGATCGTTACAGGTTAGCCAAATGTGGCCGTGGGTTCGGCCGTAGAGCCACCGGAGGCCTCGGCGGCCCAATCTACGTTGTTACCAACCCCTCAGATACCAACATGGAAAACCCTATCCCTGGAACTCTCCGTTATGGTGTCACCAGAAAGGGACCATTGTGGATCATATTCAAAACTAGCATGGTTATCACTTTGGAACAAGAATTGATGGTTTCTTCAGACAAAACCATTGATGGTCGTGGTGCTAATGTTCAGATTAAGGGTGGTGGTGGAATCACCATGCAATTTGTGAACAATGTTATTGTTCATAATCTTAGGATTAGTAAGATTGTGGCTAAGAAAGGTGGCATGGTTAGAGATTCTTTTGATCATGTTGGGTTTAGAACAAGGAGTGATGGTGATGCTATCTCTGTTTATCAATCTTCAAACATTTGGATTGATCATCTTTCTTTGTCTGAAAGTGAGGATGGTCTTGTTGATGTTATCCAAGGTTCCACTGGTATCACTATCTCAAATTGTCACATGACCAAGCATAACGATGTGATGCTATTAGGAGCTAGTGATAGTTTCAGTGGAGACAAGATCATGCAAGTAACAGTGGCATTCAACCACTTTGGTCAAGGATTGATTCAAAGGATGCCAAGACTAAGATGGGGTTTTGTTCATGTTGTGAACAATGACTACACTCATTGGCTCATGTATGCAATTGGTGGTAGTTCAGGTCCAACAGTTCTAAGCCAAGGAAATCGTTTCATTGCACCAAACAATGATGCTGCAAAAGAGATTACACATAGAGATTATGCAACACCAGAAGTGTGGAAAAAATGGCAATGGACTTCAGATCAAGATTATTTCATGAATAATGCTACATTTACTCAAACTGGTAATAAAGTTACAAATCTTCCTTATGGGAAAAAGTTCATCATGAAACCAAGACATGGAATCTATGCAAATAGGCTTACAAGATGGGCTGGTGCACTTCCTTGCATTGCAGGTTTACCTTGCTAG 1356 0.41 MRTIMVGSVTKVCFIVLVTLAIVIPCLEAGIAEFDDYLKAQAEEARKLTLETYVPNPEEITEDLNLHVHKALQEYENESTNSTTRRELRQGRKHRGPCQATNPIDRCWRCQANWANDRYRLAKCGRGFGRRATGGLGGPIYVVTNPSDTNMENPIPGTLRYGVTRKGPLWIIFKTSMVITLEQELMVSSDKTIDGRGANVQIKGGGGITMQFVNNVIVHNLRISKIVAKKGGMVRDSFDHVGFRTRSDGDAISVYQSSNIWIDHLSLSESEDGLVDVIQGSTGITISNCHMTKHNDVMLLGASDSFSGDKIMQVTVAFNHFGQGLIQRMPRLRWGFVHVVNNDYTHWLMYAIGGSSGPTVLSQGNRFIAPNNDAAKEITHRDYATPEVWKKWQWTSDQDYFMNNATFTQTGNKVTNLPYGKKFIMKPRHGIYANRLTRWAGALPCIAGLPC* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0895 451 Pfam Pectate lyase 184 367 IPR002022 -
Lan8g0895 451 SUPERFAMILY Pectin lyase-like 91 444 IPR011050 -
Lan8g0895 451 SMART amb_all 176 373 IPR002022 -
Lan8g0895 451 Gene3D - 101 444 IPR012334 -
Lan8g0895 451 PANTHER PECTATE LYASE 18-RELATED 9 451 IPR045032 GO:0030570
Lan8g0895 451 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Lan8g0895 451 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
Lan8g0895 451 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Lan8g0895 451 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Lan8g0895 451 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Lan8g0895 451 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Lan8g0895 451 PRINTS Pollen allergen Amb family signature 392 416 IPR018082 -
Lan8g0895 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Lan8g0895 451 PANTHER PECTATE LYASE 9 451 - -
Lan8g0895 451 MobiDBLite consensus disorder prediction 75 97 - -
Lan8g0895 451 Pfam Pectate lyase, N terminus 31 88 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0895 Lan-Chr8 10654573 10656648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0895 9 451 Polysaccharide Lyase AT5G15110 51.789 6.53e-178 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0895 K01728 - gmx:100810615 660.603