Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan8g0890 | ATGGCTGAGTCCTCAGATTCTAATAAAGGAACCAAAAGGGATTTCAGCACTGCGATTTTGGAACGTAAGAAAGCACCGAATCGTCTCGTTGTTGATGAATCAATCGATGATGATAACTCCGTTGTTGCTCTTCATCCTGATACCATGGAGAAGCTTCAGCTATTTCGCGGTGACACTATCTTGATCAAGGGAAAGAAAAGGAAAGATACAGTTTGTATTGCACTTGCTGATGACACTTGTGAGGAGCCGAAGATAAGAATGAACAAGGTTGTGAGAAACAACCTCCGGGTTAGGCTGGGAGATGTTGTCTCTGTTCATCAATGCCCTGATGTCAAATACGGAAAGCAAGTCCACATTCTTCCTGTTGATGACACTATTGAAGGGGTAACTGGGAATCTGTTTGATGCCTACCTAAAACCATATTTCCTGGAGGCATATCGTCCAGTGAGGAAGGGTGACTTTTTCCTCGTAAGAGGGGGGATGAGGAGTGTAGAATTCAAGGTTATTGAAACTGACCCTGGTGAGTATTGTGTTGTTGCACCTGACACTGAGATCTACTGTGAAGGAGAGCCTATTAAGAGGGAAGATGAGAATCGATTGGATGAGATTGGTTATGATGATGTTGGTGGTGTAAGAAAGCAGATGGCACAGATTCGGGAACTGGTTGAACTGCCATTGAGGCATCCACAATTGTTCAAGTCTATTGGTGTTAAGCCACCGAAAGGAATTCTGCTCTATGGCCCCCCTGGGTCTGGTAAGACATTAATTGCCCGTGCAGTTGCAAATGAAACTGGTGCCTTCTTTTTCTGCATCAATGGCCCTGAAATTATGTCAAAACTGGCTGGTGAAAGTGAAAGCAATCTAAGGAAAGCATTTGAGGAAGCTGAGAAGAATGCACCCTCCATCATCTTCATTGATGAGATAGATTCAATAGCTCCAAAGCGGGAGAAGACTAATGGTGAAGTTGAGAGGAGAATTGTTTCCCAGCTCTTGACTCTCATGGATGGGCTTAAATCACGTGCGCATGTTATTGTTATGGGAGCAACAAATCGTCCCAACAGCATTGACCCTGCTCTTAGGAGGTTCGGAAGGTTTGATCGGGAGATCGATATTGGTGTTCCTGATGAAGTTGGGCGTCTTGAGGTTCTTCGAATCCATACAAAGAATATGAAGCTTGCGGAAGATGTTGATTTAGAAAAGATTTCTAAGAACACCCACGGCTATGTTGGTGCTGATTTAGCTGCTTTATGTACTGAAGCTGCACTTCAGTGCATCAGAGAGAAAATGGACGTAATTGATTTGGAAGATGATACCATTGATGCTGAGATACTGAACTCAATGGCGGTGACAAATGAGCATTTCCAGACTGCTCTTGGTTCAAGTAATCCTTCCGCTCTCCGTGAAACAGTTGTTGAAGTGCCCAATGTCAGCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGAGAACTTCAAGAGACTGTTCAATATCCAGTGGAACACCCTGAGAAATTTGAAAAGTTTGGAATGTCACCTTCAAAGGGGGTTCTTTTCTATGGTCCTCCTGGTTGTGGTAAAACCCTTCTGGCAAAAGCTATTGCCAATGAATGTCAGGCAAACTTCATCAGTATCAAAGGTCCTGAGCTACTTACAATGTGGTTTGGAGAAAGTGAGGCTAATGTGAGGGAAATTTTTGACAAGGCTCGTGGTTCTGCTCCATGTGTTCTATTCTTTGATGAACTTGACTCGATTGCAACTCAGAGAGGCAGTAGCGTAGGAGATGCTGGTGGTGCTGCTGATAGGGTTTTAAATCAGCTGCTTACGGAAATGGATGGGATGTCAGCAAAGAAAACCGTGTTCATCATCGGGGCTACTAATCGACCAGACATTATAGATCCTGCTCTTCTGCGACCAGGGCGTCTAGATCAGTTGATTTATATCCCCCTTCCAGATGAGGAATCCCGCTTTCAGATCTTTAAATCTTGCTTGAGAAAATCCCCCATTGCAAAAGATGTTGACCTTAGAGCTCTGGCCAAGTATACTCAAGGCTTCAGTGGTGCTGATATTACTGAGATTTGCCAGCGAGCATGCAAGTATGCTATAAGAGAGAACATCGAAAAGGATATTGAGAGAGAAAGGAGGAGAAGTGACAACCCTGAGGCCATGGAAGAGGATATTGAAGACGAAGATGTAGCAGAAATCAAGGCAGCTCATTTTGAAGAATCGATGAAGTTTGCACGAAGGAGCGTGAGTGATGCCGACATTCGCAAGTACCAGGCATTTGCCCAGACATTGCAGCAGTCAAGAGGGTTTGGAACCGAGTTCAGGTTTGCAGATAATACCAGCTCGGGTGCTGCTACTGCTGCTGCTTCTGACCCCTTTGCAAGTTCTGGTGGAGCTGATGATGATGATCTTTATAGTTAG | 2424 | 0.4435 | MAESSDSNKGTKRDFSTAILERKKAPNRLVVDESIDDDNSVVALHPDTMEKLQLFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKQVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDFFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIYCEGEPIKREDENRLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEKISKNTHGYVGADLAALCTEAALQCIREKMDVIDLEDDTIDAEILNSMAVTNEHFQTALGSSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRFQIFKSCLRKSPIAKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSDNPEAMEEDIEDEDVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFADNTSSGAATAAASDPFASSGGADDDDLYS* | 808 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan8g0890 | 807 | Pfam | ATPase family associated with various cellular activities (AAA) | 243 | 372 | IPR003959 | GO:0005524|GO:0016887 | |
Lan8g0890 | 807 | Pfam | ATPase family associated with various cellular activities (AAA) | 516 | 649 | IPR003959 | GO:0005524|GO:0016887 | |
Lan8g0890 | 807 | Gene3D | - | 374 | 465 | - | - | |
Lan8g0890 | 807 | Gene3D | - | 466 | 649 | IPR027417 | - | |
Lan8g0890 | 807 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 474 | 763 | IPR027417 | - | |
Lan8g0890 | 807 | CDD | AAA | 209 | 372 | - | - | |
Lan8g0890 | 807 | ProSitePatterns | AAA-protein family signature. | 343 | 361 | IPR003960 | GO:0005524|GO:0016887 | |
Lan8g0890 | 807 | SMART | CDC48_2_2 | 128 | 194 | IPR004201 | - | |
Lan8g0890 | 807 | MobiDBLite | consensus disorder prediction | 786 | 807 | - | - | |
Lan8g0890 | 807 | SMART | CDC48_N_2 | 28 | 111 | IPR003338 | - | |
Lan8g0890 | 807 | TIGRFAM | CDC48: AAA family ATPase, CDC48 subfamily | 38 | 766 | IPR005938 | GO:0016787 | |
Lan8g0890 | 807 | Gene3D | - | 111 | 207 | - | - | |
Lan8g0890 | 807 | Gene3D | - | 653 | 762 | - | - | |
Lan8g0890 | 807 | Pfam | Cell division protein 48 (CDC48), N-terminal domain | 28 | 109 | IPR003338 | - | |
Lan8g0890 | 807 | SUPERFAMILY | Cdc48 domain 2-like | 110 | 202 | IPR029067 | - | |
Lan8g0890 | 807 | CDD | AAA | 482 | 649 | - | - | |
Lan8g0890 | 807 | ProSitePatterns | AAA-protein family signature. | 619 | 637 | IPR003960 | GO:0005524|GO:0016887 | |
Lan8g0890 | 807 | PANTHER | AAA-FAMILY ATPASE | 4 | 780 | - | - | |
Lan8g0890 | 807 | SMART | AAA_5 | 239 | 375 | IPR003593 | - | |
Lan8g0890 | 807 | SMART | AAA_5 | 512 | 651 | IPR003593 | - | |
Lan8g0890 | 807 | Gene3D | - | 208 | 372 | IPR027417 | - | |
Lan8g0890 | 807 | SUPERFAMILY | ADC-like | 25 | 108 | IPR009010 | - | |
Lan8g0890 | 807 | Gene3D | - | 5 | 110 | - | - | |
Lan8g0890 | 807 | Pfam | Cell division protein 48 (CDC48), domain 2 | 130 | 193 | IPR004201 | - | |
Lan8g0890 | 807 | PANTHER | CELL DIVISION CYCLE PROTEIN 48 HOMOLOG | 4 | 780 | - | - | |
Lan8g0890 | 807 | Pfam | AAA+ lid domain | 395 | 436 | IPR041569 | - | |
Lan8g0890 | 807 | Pfam | AAA+ lid domain | 671 | 711 | IPR041569 | - | |
Lan8g0890 | 807 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 203 | 464 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan8g0890 | Lan-Chr8 | 10592085 | 10596566 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan8g0890 | 445 | 776 | Calmodulin-binding Proteins | AT3G56690 | 42.771 | 5.50e-80 | 276 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan8g0890 | K13525 | - | gmx:100791603 | 1509.2 |