Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0882 ATGAAAAGAGCAAGGGATGATGTTTTTTCTGGCTCTCAATTCAAACGCCCCTTTGGTTCCTCACGTGCTGATTTCTATGGCCAAAATCAAATCGCCGGAGGAGGAGGAGTAGGTGGAGGTGGAGGTGGTGGCAGTGGGACAGGAGGCGGAGGAGCAACTACATCACAGAAACTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGTGAAAGACATGTTTCATGACCAAAGAGACAAATATGATTTGTTCCTTGAGGTTATGAAAGATTTCAAGGCTCAAAGGACCGACACTGCTGGTGTCATAGCAAGAGTTAAGGAGCTATTTAAAGGGCACAATAATTTGATTTTTGGATTTAATACTTTCTTGCCAAAGGGGTATGAGATAACACTTGATGAGGATGATGCTCCTCCTAAGAAGACGGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCTTGTTTACAAATCATTCTTGGACATTTTGAATATGTACCGCAAAGAGCATAAGGACATTGGGGAGGTTTATAGTGAGGTTGCTACCCTTTTTAAGGACCATCGGGATTTACTCGATGAGTTTACTAGATTTTTACCAGATACTTCTGGAACACATTCTGCACACCATGCTCCATTTGGTCGAAATTCGATGCAGCGCTTTAATGAGCGGAGTTCTTCAGCACCCATGATGCGGCCAATGCAGCGATATCGACGGGACAGGCTACTTGCTTCTCATGATCGTGATCTGAGTATTGATCACACTGATCTTGATGATGACAAAACAATGATCATGCACAAGGAACAGAGGAAACGCGAGAGCCGGGATAGGAGAATCCGTGACCATGATGAGAGAGAAGCTGATCTTGATAACAACAGGGATCTGAACTCGCAACGCTTTCCTGACAAAAAGAAATCTTTCAAAAAGGCTGAAGGTTTTGGTATGGCTACTGACTTTGCCTCTAATGATGACAAAGATACCTTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGTAGTGCAGATGACTACCAAGCATTCTTGAAGTGCCTTCACATTTTCAGCAATGGAATAATAAAAAGGAATGATTTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATTCTGATCTTATGGATGAATTCAATGATTTCTTGGAGCGTTGCGAAAATATTGATGGATTCCTCGCTGGTGTCATGAGTAAAAAGTCATTGTCTACTGATGCTCATGCATCAAGATCATCAAAGTTGGAGGACAAAGAGAAAGAGCAGAAGCGTGAGATGGATGGAGGTAAAGAGAAGGAAAGACACAGGGAAAACAAATACCTTTCAAAATCCATTCAAGAGCTTGATCTTAGCGACTGTAAACGCTGTACTCCCAGCTACCGTCTTCTTCCCTCAGATTATCCATTTCCGAAGGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTTTTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTATTCTTTCAAGCATATGCGCAGGAATCAGTATGAAGAAAGCTTGTTTAGATGTGAAGATGACAGATTTGAGCTGGACATGCTATTAGAGTCCGTGATTTCAGCTGCTAAACAAGCAGAGGAATTGTATAATAACATTACTGAAAATAAGATCAATAAGGAGAATCTGAGCTGTATTGAAGATCATTTCACCGTTCTAAATTTAAGGAGCATTGAACGTCTATATGGAGACCATGGTCTTGACGTTATAGAAATATTGCGTAAAAATCCAAATCATTCTCTGCCTGTAATAATTACCCGACTGAAGCAGAGACAAGAGGAGTGGTCTAGGTGTCGTTCAGATTTCAATAAGGTTTGGGCTGAAATTTATGCTAAAAATCACTACAAATCACTTGATCACCGTAGCTTCTACTTCAAGCAGCAAGATTCAAAGAACTTGAGCGCAAAATCTTTGGTGGCTGAAATTAAAGAAATTAAAGAGAAGCAGCAGAAAGAGGATGATATTCTTCAGTCAATTGCCGCTGGAAATAAACAGCCTCTAATTCCACATCTGGAATTCGAATATTCTGATACTTCGATTCACGAAGACCTGTATAAACTCATTCAGTACTCATGTGAAGAGCTCTTCTCTAGTAAGGAGTTGTCAAATAAAATTATGAGGCTTTGGAGTACCTTCTTGGAGCCAATTCTCGGTGTTCCTTCCCAATCTCCTAGGACCGAAAAGGTGGAGGAGAGGAAAGCAGACCATAATGTTTGTGACGGAAGTCCTCATGGAGACTCTATTTCAACGAGTTCAAGGTCACCAAAATTGGATAAGAATGAAGCTGATGGTAGAACAACTGAAGTAAAGAATGCTCATCGGACTGGTTTAGCAGCTAATGATAAAGAAAATGTATCTGTAGGTGGTGAACTGGTTTGTAGAGACGATCCTTTGACGGATAAAGGGCAGAAAAATGTAGAATACACTGATAAATCCTCCGGATTTAGTAAACAACTTGCTGCTGATGAACAAGGTGCTAAAAGCAATGCATCGATTGCAGTTAGAGGAGAAAATAGCCTGAGCAGAATGAACACAGAATTGACTCCAGCCAAATCTCAGAGTGCCAATGCACCTTTGGTGGAGGGATGTGACACCACAGCTCCAGTTCCGGTGACGAATGGCGTGACGAACGAGAGCATTAAAGTTAAAAGCCATGAAGAATCTGTTAGGCCTTCTGCTGGGCTTTGCAAAATTGAGAAGGAAGAGGGTGAATTATCCCCAAATGGTGATTCTGAGGAAGATAACTTTGTCGGATATGGAGATTCCAATGCACAATCAATGGCCAAGTCAAATCATAGTAACGAGAGAAGGAAATATCAGTCTAGAAATGGAGAGGACGAATGCTGTCCAGAGGCAGGAGGTGATAACGATGCAGATGCTGATGACGAGGACAGTGAGAATGTTTCTGAAACTGGTGAAGATGCCTCAGGCAGTGAGTCTGCTGGCGATGAAGGCTTCCGTGAAGATCATGAGGAAGAGGAAGAGATCGAGCATGATGATGTTGATGGTAAGGTTGAGAGTGAAGGTGAAGCTGATGGAGATGCACAATCTGTTGGAGATGGTTCATCATTACTATTGTCAGAGAGGTTCCTTTCGTCAGTGAAACCTCTCACAAAGCATATATCGGCAGTTTCATTTGTGGAAGAAATGAAGGATTCCAGGGTGTTTTATGGAAATGATGATTTTTATGTGCTTTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCAGCAAAAACAAATTCAACTAGTGCAGATACGAAATGGAAAACGAAGGATGCTAGTTCCCCAGATCCTTACTCAAGATTTATGAGTGCGTTGTACAACTTGCTTGATGGATCTTCTGAGAATGCAAAGTTTGAGGATGAATGCCGTGCAATTATCGGGAATCAGTCATATGTGCTATTCACATTGGACAAGTTAATATATAAGTTGGTCAGACAGCTTCAAACTGTTGCAACCGACGAGGTAGACAGTAAACTTCTCCAATTGTATGAGTATGAGAAGTCTCGGAAACCCGGGAAATTAAATGGTTCAGTCTATCATGCTAATGCTCATGTCATCCTTCATGAAGAGAATATATATCGATTACAATGTTCTTCTACCCCTTCTCGACTATCCATCCAGCTCATGGACAATATGAATGAAAAGCCTGAGATGTTTGCTGTATCTATTGATCCGAATTTTTCCTTTTATCTGCACAATGATTTTCTGTCTGTCTCTCCTAGCAAAAAGGGACCCCATGGCGTTATACTTCAAAGAAACAAACGCAAATATGAAGGCTTAGATGAGTTCTCTGCATATTGTTCCGCCATGGATGGTGTTCAAGTAATTAATGGATTGGAATGCAAGATAGCTTGCAACTCATCCAAGATTTCATATGTTCTCGACACACAAGATTTTTTCTTCCGCCCCAAAAGTAAAAGAAGAGCATCATCAAGGACCACATCTTCTTCTTCCCGACATCGCAGGCAGGAAAGGTATCGCAGGTTGTTGGCATTCCCGCAATGA 4095 0.4107 MKRARDDVFSGSQFKRPFGSSRADFYGQNQIAGGGGVGGGGGGGSGTGGGGATTSQKLTTNDALSYLKEVKDMFHDQRDKYDLFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDDAPPKKTVEFEEAISFVNKIKKRFQNDELVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLDEFTRFLPDTSGTHSAHHAPFGRNSMQRFNERSSSAPMMRPMQRYRRDRLLASHDRDLSIDHTDLDDDKTMIMHKEQRKRESRDRRIRDHDEREADLDNNRDLNSQRFPDKKKSFKKAEGFGMATDFASNDDKDTLKSMYSQAFSFCEKVKEKLSSADDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDAHASRSSKLEDKEKEQKREMDGGKEKERHRENKYLSKSIQELDLSDCKRCTPSYRLLPSDYPFPKASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVISAAKQAEELYNNITENKINKENLSCIEDHFTVLNLRSIERLYGDHGLDVIEILRKNPNHSLPVIITRLKQRQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSAKSLVAEIKEIKEKQQKEDDILQSIAAGNKQPLIPHLEFEYSDTSIHEDLYKLIQYSCEELFSSKELSNKIMRLWSTFLEPILGVPSQSPRTEKVEERKADHNVCDGSPHGDSISTSSRSPKLDKNEADGRTTEVKNAHRTGLAANDKENVSVGGELVCRDDPLTDKGQKNVEYTDKSSGFSKQLAADEQGAKSNASIAVRGENSLSRMNTELTPAKSQSANAPLVEGCDTTAPVPVTNGVTNESIKVKSHEESVRPSAGLCKIEKEEGELSPNGDSEEDNFVGYGDSNAQSMAKSNHSNERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSETGEDASGSESAGDEGFREDHEEEEEIEHDDVDGKVESEGEADGDAQSVGDGSSLLLSERFLSSVKPLTKHISAVSFVEEMKDSRVFYGNDDFYVLFRLHQILYERILSAKTNSTSADTKWKTKDASSPDPYSRFMSALYNLLDGSSENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDEVDSKLLQLYEYEKSRKPGKLNGSVYHANAHVILHEENIYRLQCSSTPSRLSIQLMDNMNEKPEMFAVSIDPNFSFYLHNDFLSVSPSKKGPHGVILQRNKRKYEGLDEFSAYCSAMDGVQVINGLECKIACNSSKISYVLDTQDFFFRPKSKRRASSRTTSSSSRHRRQERYRRLLAFPQ* 1365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0882 1364 MobiDBLite consensus disorder prediction 907 932 - -
Lan8g0882 1364 MobiDBLite consensus disorder prediction 905 1047 - -
Lan8g0882 1364 Gene3D Paired amphipathic helix 62 124 IPR036600 GO:0006355
Lan8g0882 1364 Pfam Paired amphipathic helix repeat 164 207 IPR003822 GO:0006355
Lan8g0882 1364 Pfam Paired amphipathic helix repeat 79 123 IPR003822 GO:0006355
Lan8g0882 1364 Pfam Paired amphipathic helix repeat 358 402 IPR003822 GO:0006355
Lan8g0882 1364 Gene3D Paired amphipathic helix 139 211 IPR036600 GO:0006355
Lan8g0882 1364 SUPERFAMILY PAH2 domain 339 405 IPR036600 GO:0006355
Lan8g0882 1364 MobiDBLite consensus disorder prediction 752 767 - -
Lan8g0882 1364 SMART hdac_interact2seq4b 470 569 IPR013194 -
Lan8g0882 1364 MobiDBLite consensus disorder prediction 747 801 - -
Lan8g0882 1364 Coils Coil 543 570 - -
Lan8g0882 1364 Pfam Sin3 family co-repressor 472 564 IPR013194 -
Lan8g0882 1364 MobiDBLite consensus disorder prediction 428 455 - -
Lan8g0882 1364 ProSiteProfiles PAH domain profile. 140 210 IPR003822 GO:0006355
Lan8g0882 1364 PANTHER SIN3B-RELATED 1 1349 IPR039774 GO:0003714
Lan8g0882 1364 MobiDBLite consensus disorder prediction 423 455 - -
Lan8g0882 1364 MobiDBLite consensus disorder prediction 36 55 - -
Lan8g0882 1364 MobiDBLite consensus disorder prediction 977 997 - -
Lan8g0882 1364 ProSiteProfiles PAH domain profile. 56 126 IPR003822 GO:0006355
Lan8g0882 1364 MobiDBLite consensus disorder prediction 958 976 - -
Lan8g0882 1364 MobiDBLite consensus disorder prediction 211 242 - -
Lan8g0882 1364 Gene3D Paired amphipathic helix 334 407 IPR036600 GO:0006355
Lan8g0882 1364 SUPERFAMILY PAH2 domain 54 125 IPR036600 GO:0006355
Lan8g0882 1364 MobiDBLite consensus disorder prediction 1013 1028 - -
Lan8g0882 1364 ProSiteProfiles PAH domain profile. 336 405 IPR003822 GO:0006355
Lan8g0882 1364 MobiDBLite consensus disorder prediction 783 797 - -
Lan8g0882 1364 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1349 - -
Lan8g0882 1364 SUPERFAMILY PAH2 domain 137 209 IPR036600 GO:0006355
Lan8g0882 1364 Pfam C-terminal domain of Sin3a protein 1083 1330 IPR031693 -
Lan8g0882 1364 MobiDBLite consensus disorder prediction 269 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0882 Lan-Chr8 10527470 10538346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0882 31 159 WRKY Transcription Factor Family AT4G12020 46.154 2.87e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan8g0882 Sin3a_C 4.9e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0882 K11644 - gmx:100807181 2099.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0066 5 783506 794528 Lan8g0882 8 10527470 10538346 LSH
Lan8g0882 8 10527470 10538346 Lan20g1222 20 17806101 17815975 LSH