Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0873 ATGGAGATTCAACAAACACTGAAGCTCTTAGTCCACAGAAAAAACACACACAACAAGAAATCAGATAAACTTCCACAACCCATTACTCCAAGGTTCAAATGGAAGCAAATCTTTTTCCACCACACCAAATCACAACAACAACCACCTTCAAAACCCAACAACAAAATTACAGAAAAACCCCCAGAAGAATTTCTCTGCCCCATAACCAAAACCCTAATGTCAGATCCAGTTATAGTCTCTTCAGGCCACTCCTTCGATCGAATCACTGTTCAAACTTGTCAAAATCTCAACTTTACCCCTCAACTCTTAGATGGTACTACCCCTGATTTCTCCAACGTTATCCCCAACCTTGCCCTCAAATCCGCCATAACCAAATGGTGTATAAACTCCAACAATACTCTCGTCGCACCAGATTCCACCACTACAGAAAACATCATACACGCAATAATTTCAAAACAGAGTGATCAGAATCAGAATGTGCCAACCCAAGTTGCTACAGTTTCGGAAAAAGATTTGATTTTGAGGATGGAGGAAAACCCTAATTTCAATTTCAACCGCGCCGAAACCCAAATCCCTAATAGGCCAGCACTTTTTTATTCTACCTCAGACGAATCCATAGCTACTAATGCTTCAGCTTCAGCTTCAACACCACCTCTTCAATTTTCAATAAAACCTAGTTGCTACTACTCTTACTCTTCAAATTCCTCTTCTGAAATTGAACCCACCACAATCCCTGAATTGGAACAAATCATATCAAACCTCAAAAGCCCCCAAATTTTCATCATCGAAGAGGGTTTAATTTCACTTAGAAAGATTACAAGAACAAGAGAGGAAATTAGGGTTTCTCTCTGCACATCTCAATTACTCTCTGTTTTAAAATCTCTCATTGTTTCAAAGTACACGAATGTTCAGGTCAACGCTCTTGCTTCAGTGGTCAACCTTTCGTTGGAGAAATTAAACAAGGTGAAGATCGTACGGTCAGGGATTGTTCCACCGTTGATTGAAGTTTTGAGGCTGGGATCCTCTGAATCGCAGGAACTCGCTTCCGGTGCGCTCTTTAGTTTGGCTATAGAACATGATAACAAAACCGCCATTGGTGTTCTGGGTGGTTTGCAACCCTTGCTTCACGCGCTGCGTTCGGAGAGTGAGCGCACGCGTCATGACTCGGCCCTAGCGCTTTATCATTTATCCATGGTTCAGAGTAATATGTCAAAGATGGTTAAGTTCGGTTCGGTTCCAGTTTTAATGATGATGGTTGAGTCGGGTCATATGATAAGTCGGGTTTTGTTGATTTTGTGTAATTTGGGCTCTGGGTCGGATGGGCGGGCTGCAATGTTGGATGCGGGTGTGGTTGAATGTTTGGTGGGGTTGTTGGGTGGGTCCGAGTTGGGAATCGGGTCAACTCGAGAGAGTTGTGTGAGTGTGATGTATGCATTGAGTCATGGTGGGTTGAGATTTAAGGCATTGGCAAAGGCGGCAGGGGTGGTGGAGGTGTTGCAAAAGGTGGAGAAGGTCGGGAGTGAGAGGGCGAGGGAGAAGGTGAGGCGGATTTTGGAGATGATGAGAGGGAAGGAGGAAGAGGAGGAGGATGTGGATTGGGAGGATCTACTCGACTCCGGGTTAGGTTGTCGAACTCGTGGCCGACATTGTAGCGAGTTGGATGATTCTAATGCTAACTCGTCCGAGTTTTGA 1692 0.4439 MEIQQTLKLLVHRKNTHNKKSDKLPQPITPRFKWKQIFFHHTKSQQQPPSKPNNKITEKPPEEFLCPITKTLMSDPVIVSSGHSFDRITVQTCQNLNFTPQLLDGTTPDFSNVIPNLALKSAITKWCINSNNTLVAPDSTTTENIIHAIISKQSDQNQNVPTQVATVSEKDLILRMEENPNFNFNRAETQIPNRPALFYSTSDESIATNASASASTPPLQFSIKPSCYYSYSSNSSSEIEPTTIPELEQIISNLKSPQIFIIEEGLISLRKITRTREEIRVSLCTSQLLSVLKSLIVSKYTNVQVNALASVVNLSLEKLNKVKIVRSGIVPPLIEVLRLGSSESQELASGALFSLAIEHDNKTAIGVLGGLQPLLHALRSESERTRHDSALALYHLSMVQSNMSKMVKFGSVPVLMMMVESGHMISRVLLILCNLGSGSDGRAAMLDAGVVECLVGLLGGSELGIGSTRESCVSVMYALSHGGLRFKALAKAAGVVEVLQKVEKVGSERAREKVRRILEMMRGKEEEEEDVDWEDLLDSGLGCRTRGRHCSELDDSNANSSEF* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0873 563 ProSiteProfiles U-box domain profile. 59 133 IPR003613 GO:0004842|GO:0016567
Lan8g0873 563 SMART arm_5 317 357 IPR000225 GO:0005515
Lan8g0873 563 SMART arm_5 438 481 IPR000225 GO:0005515
Lan8g0873 563 SMART arm_5 358 398 IPR000225 GO:0005515
Lan8g0873 563 SUPERFAMILY RING/U-box 54 132 - -
Lan8g0873 563 Pfam Armadillo/beta-catenin-like repeat 360 397 IPR000225 GO:0005515
Lan8g0873 563 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 33 552 - -
Lan8g0873 563 Pfam U-box domain 61 128 IPR003613 GO:0004842|GO:0016567
Lan8g0873 563 SUPERFAMILY ARM repeat 246 520 IPR016024 -
Lan8g0873 563 PANTHER U BOX DOMAIN-CONTAINING 33 552 - -
Lan8g0873 563 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 370 IPR000225 GO:0005515
Lan8g0873 563 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 136 IPR013083 -
Lan8g0873 563 SMART Ubox_2 63 126 IPR003613 GO:0004842|GO:0016567
Lan8g0873 563 Coils Coil 507 527 - -
Lan8g0873 563 Gene3D - 242 520 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0873 Lan-Chr8 10482804 10485108 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0873 1 563 U-box Gene Family AT5G40140 49.476 2.56e-167 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0873 - - lja:Lj2g3v1020040.1 668.692