Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0845 ATGGCTGCCACAGCAACTGCTTCAGTGGGTCCACGTTATGCACCAGCTGACCCGACACTTCCCAAGCCATGGCGGGGTCTTGTGGATGGTAAGACTGGGTATCTTTACTTTTGGAATCCTGAAACCAATGTCACCCAATATGAGAGGCCTTCAAGCTCAGCTGCCCCACCAAAGTCATCCTCAGTGTCTAGTTCTGTCCAGGTTCAACAACAATCATCTCTAGGTATGCATCGTGGTCGCAGTCCAGATTTGAATGATAGGTATGATAGAAATGGCAGCAGAGAGTCTAATGCTGAAGCTGGATCACGGAACCATCAGAGTTCCAAAGGTGGAGGTTTTAGTTCTCATAATGGGATGCAAGATTCTGGAAATGGTAGTTCTTCTATCAAAGATCCTGTGGCATTCGATGCTGGACCTGAATTATCTCCTGAGGCTTATCGCCGTCGCCATGAAATAACTGTTTCTGGGGATAAAGTGCCTCCACCTATTATATCATTTGGATCGAGTGGCTTACCATCTGAGATTCTAAAAGAGGTACAAAGTGCTGGATTCTCAGCCCCAACTCCAATTCAGGCACAATCATGGCCTATTGCTCTTCAAAGTAGAGATATAGTCGCCATTGCTAAGACTGGTTCAGGGAAAACTTTGGGGTATTTAATCCCATCATTTATGCACATCAAGCGTGTTTCTAATAATTCCAGATTAGGCCCCACTGTATTGGTACTGTCTCCAACGAGGGAGCTGGCCACACAAATCCAAGATGAAGCTGTGAAGTTTGGGAAATCATCGAGATTTTCTTGTGTGTGTTTGTATGGAGGGGCACCAAAGGGTCCACAATTGAGAGACATTGATCGTGGAGCAGATATTGTGGTAGCCACTCCTGGTCGGTTGAATGATATTCTTGAGATGAGGAGAATTAGTCTTCAACAGGTCTCTTACCTTGTGCTCGATGAGGCAGACAGGATGCTGGACATGGGTTTTGAGCCTCAGATTAGGAAGATTGTGAATGAGGTTCCTGCTCATAGGCAAACTCTCATGTATACTGCAACATGGCCTAAGGAAGTTAGGAAAATTGCAGCTGATTTTATGGTCAATCCAGTCCAGGTCAACATTGGCAATGTAGATGAGCTTGTTGCTAACAAATCCATTACTCAGCATGTTGAAGTATTGTCATCAATGGAGAAACAGAGACGACTGGAAGCTATTATACGGACCCAGGATCCAGGATCAAAAATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTCTCACGTCAGTATGGAGCTACTGCTATTCATGGGGATAAATCCCAGGGTGAGAGGGACCATGTGTTGAGTCAATTTCGAACTGGGAAGACCCCTGTGCTTGTAGCCACAGATGTTGCAGCTCGAGGACTGGATGTTAAAGATATTAGGGTGGTTGTCAACTATGACTTCCCTACAGGAGTGGAAGATTATGTTCATAGGATTGGAAGGACAGGGAGGGCTGGAGCCACTGGTTTAGCTTACACTTTCTTCGGGGACCAGGATGCTAAACATGCTTCAGATCTCATCAAAGTTTTGGAAGGTGCAAATCAGCGAGTCCCTCCAGAACTCCGTGATATGTCATCGCGGGGTGGTGGGATGAACAGATCCAGAAGATGGGGTTCTGGTGGCTCTGGATATGGTGGAAGGAGCAATGACACAGGATATGGTGGGAGAGGTAGTGATTCAAGTTTTGGAGGTAGGGGTAGTGATTCAGGATATGGTGGGAGAGGTGGTGACTCGAATTATGGAGGGAGAGGTGGGTGGTCTGCTTCTGCAGGCAGTGGTGGAGGCCGTGGTTTTGATTCTGACTCACAGAGGAATGATCGTGGTCGAAGCCCTGACAAGGTATCTAGTTGGAGTGATCGCTTCAAAAACCGTGATCGCAGTCGTAGTCCTGACAGGAATGCACCACCTCAGAATTCCAAAATCAGCTTTCACCAAGCAATGATGGAACGTAGTGGAGGAGATGGTGATGGAAGAAATGGTGGATCTAATTCCAAGTACAATGGAGAAGAAGAGGAAGGGATGATTCGTGATGAAGAAGGCACGATATAG 2100 0.4614 MAATATASVGPRYAPADPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSAAPPKSSSVSSSVQVQQQSSLGMHRGRSPDLNDRYDRNGSRESNAEAGSRNHQSSKGGGFSSHNGMQDSGNGSSSIKDPVAFDAGPELSPEAYRRRHEITVSGDKVPPPIISFGSSGLPSEILKEVQSAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPSFMHIKRVSNNSRLGPTVLVLSPTRELATQIQDEAVKFGKSSRFSCVCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLQQVSYLVLDEADRMLDMGFEPQIRKIVNEVPAHRQTLMYTATWPKEVRKIAADFMVNPVQVNIGNVDELVANKSITQHVEVLSSMEKQRRLEAIIRTQDPGSKIIIFCSTKKMCDQLARNLSRQYGATAIHGDKSQGERDHVLSQFRTGKTPVLVATDVAARGLDVKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKVLEGANQRVPPELRDMSSRGGGMNRSRRWGSGGSGYGGRSNDTGYGGRGSDSSFGGRGSDSGYGGRGGDSNYGGRGGWSASAGSGGGRGFDSDSQRNDRGRSPDKVSSWSDRFKNRDRSRSPDRNAPPQNSKISFHQAMMERSGGDGDGRNGGSNSKYNGEEEEGMIRDEEGTI* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0845 699 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 382 542 IPR001650 -
Lan8g0845 699 Pfam Helicase conserved C-terminal domain 395 503 IPR001650 -
Lan8g0845 699 Gene3D - 15 70 - -
Lan8g0845 699 SMART helicmild6 423 503 IPR001650 -
Lan8g0845 699 CDD WW 21 49 IPR001202 GO:0005515
Lan8g0845 699 MobiDBLite consensus disorder prediction 47 78 - -
Lan8g0845 699 ProSitePatterns WW/rsp5/WWP domain signature. 24 50 IPR001202 GO:0005515
Lan8g0845 699 ProSiteProfiles WW/rsp5/WWP domain profile. 18 52 IPR001202 GO:0005515
Lan8g0845 699 MobiDBLite consensus disorder prediction 97 129 - -
Lan8g0845 699 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 315 323 IPR000629 -
Lan8g0845 699 SMART ultradead3 183 386 IPR014001 -
Lan8g0845 699 MobiDBLite consensus disorder prediction 534 699 - -
Lan8g0845 699 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 195 369 IPR014001 -
Lan8g0845 699 Gene3D - 374 544 IPR027417 -
Lan8g0845 699 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 87 633 - -
Lan8g0845 699 SMART ww_5 19 52 IPR001202 GO:0005515
Lan8g0845 699 MobiDBLite consensus disorder prediction 80 96 - -
Lan8g0845 699 MobiDBLite consensus disorder prediction 1 25 - -
Lan8g0845 699 CDD SF2_C_DEAD 383 512 - -
Lan8g0845 699 SUPERFAMILY WW domain 12 51 IPR036020 GO:0005515
Lan8g0845 699 MobiDBLite consensus disorder prediction 47 139 - -
Lan8g0845 699 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 87 633 - -
Lan8g0845 699 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 164 192 IPR014014 GO:0003724
Lan8g0845 699 Pfam DEAD/DEAH box helicase 188 358 IPR011545 GO:0003676|GO:0005524
Lan8g0845 699 MobiDBLite consensus disorder prediction 617 648 - -
Lan8g0845 699 Gene3D - 140 373 IPR027417 -
Lan8g0845 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 519 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0845 Lan-Chr8 10273766 10279590 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0845 162 541 Eukaryotic Initiation Factors Gene Family AT3G19760 33.594 2.91e-66 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0845 K12823 - gmx:100816455 959.518