Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0834 ATGGAACCAGGCACGAGATCAGGTGCTCCTTCTGGTTGTTTGATTGTTAGAAAGAAAGAGGATAGGGTTCCGGGTTCTTCCACTTCTCCAAAGCTCTATGAATCCAAGAAAATGATGAAAAGGCCTAAGGTGGTGGTTGATTCAACTGATTCTGAATCATGTGATGATGAGTTACCCATGCCTCCTGCTTCCAGGCTTGGCCCTGAAACCATCCGAGTCTGTACTGGTTTGACTGCTCTCCAACGCCGGCAGGAGCGTGGTGGCATTGACATAAGTAGGAAGAGGGAAAGAGTTGAGCAACTTGGGTGCAATGGGGATGGTATGCTTGAGGAGAATAATGGTTCAGAGGGGAGGGAAATGAAACGTAATAAGTTAGATGTGTTTGATTTCAATGAATATGATGGCACGAGTGCTGAAATGATGAGAATGAGGCATTTTGATAATAACAAAGTTGATTTAGGAGGAAGAAGAAGGTTCATGGGAGGAATGCATGCTGCTAGAAGTGGCATTCATAGGGAATTTGAAAGTGGTTCAAGCAGAAATGTAGTCAATAAAAGAAAAAACTCCTACAACAACAGGGAAAGCGGGTTGTATCTGGGAGATAATGTTGACCATAGTAGGTTGAAGACGAACATTGATGGAGCTAAACGACCTGCACCCTTGTTAAGGGACAAGCTTAATTCAGACGAATCTGTCAGGGTTCAGGGGAAAAATGGTGTTCTGAAAGTGATGGTTAATAAAAAGAAGGCGGGTAAGCTACTAGAACACTCTGATCATCACAAGCATGTAAAAAGCCGGCATAGTTTGAGGACTGAGCGTACTTCCAAGAGGAATGCTCATATCTGTCCTTCGTCACACTTGGAAACAAAACCTGTTGAGGAACATTGCTTACTTGCTAGGCCAAAAAAGAAACAGATAGCATCAAGAAAGCAGTTGTCATGTATGGACAGTAAGGGTGGTGAGCAAAATTCAGATAATAGTGACATGTCACCGAGTCTTGGAGTAAAGAACTCTGAAGTTCGCAAGTCTTCAAAGAAGATAATTTCTGAAGATGAACAGTCTCCTAAGCATGAAAAACTGCCAACTACGAACACAAAAGAAGTAAAAGTCAAGCGTGGTAGTGGTACAGAGAAACAGAAGCTAAGAGAACAAATACGTGAGATGCTGCTTAATGCAGGTTGGACCATAGACTATCGCCCTCGAAGGAATAGAGATTATCTGGATGCAGTTTACATTCACCCTGGGGGTACAGCTTATTGGTCTATCATCAAGGCCTATGATGCACTTCAAAAGCAATTGAATGATGATGATCATGAAGCCAAGCCCAAAGGTGAGGCTTCTTCTTTTGCTCCTATCACAAATGATGTGCTCAGTCAGTTGACAAGAAACACTCGGAAGAAGATGGAGAAAGACTTGAAGAATAAGGAAAGAGATGATAGTGAGAGTGATAGTGGAGAAGAGCTGCACATCACAAGATCCTCCGGAAGGAAGCGTTGTAAGAATGACATGGATAGTGATAGCAATGATGAAAAATTAAGCTCATTTCTAAAGCAAGGAAGTAAGTCCAGGAAAACTAGAATGACTGAAAATGCTGTTACCCATCATTCAAGTGGTGGAACTGAAAAATCACTCTCTGGAAATGAGCCTCATCTCCTACATGGTAGGAAAAGTAGAAGGCATGGAAGGTGCACTTTATTAGTTCGTAATTCTAACAAGGGAACAAATTCAGAATTTGGTGACTTTGTTCCATATACTGGCAAAAGAACAGTGCTTTCCTGGTTGATTGACTCTGGGGTAGTACAGTTAAGCCAAAAGGTTCAGTACTGTAAAAGGAAGCGAGTTTTGCTGGAGGGATGGATCACAAGAGACGGCATTCACTGTGTCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCAACACGCAGGAAGCAAGTTGCACCAGCCATATCAAAACATATTTTTGAAATCTGGGGTTTCTCTTCTACAGTGCCAGATAGATGCGTGGAATAGACAAGAAAACTATGAGAAAATTAGTTTCCATTCAGTAGATATTGATGGTGATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTGATTTGTTGCGATGGTTGTCCATCAACATTTCATCAGAATTGCTTGGATATACAGATGCTCCCCCCTGGTGAATGGCATTGTCTAAATTGTACCTGTAAATTTTGTGGAATAGCCAGTGTAACTATTAACAAAGAAGATGAACCAGCTGCATATGCCTTACACACTTGTGCTTTATGCGAGAAAAAATATCATAACTCTTGTACTAAGGAGGTGGACGCCGTTCATACTAACCCCAATATGTCAGGAACTTACTTTTGTGGAAAAGACTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACCTCAGTACCAAGTATGAACTAGATGCAGGCTTTACGTGGTCTCTTATTCATAGAACAGATGAAGACTCTGAGGCAGCTAGTAGGGGAGTTACCCAGGGGGTGGAATGCAACTCCAAGCTAGCTGTTGCACTGACTGTGATGGATGAATGTTTCTTACCGGTTATCGATCGGAGGAGCGGTATCAATTTAATCCATAATGTTTTATATAATAGTGGGTCAAACTTCAATCGGTTGAATTATAATGGCTTTTATACTGCTATTTTGGAGCGAGGGGATGAAATAATTTCTGCAGCATCTATCAGGTTCCATGGCACAAAGTTAGCAGAGATGCCCTTCATTGGAACTCGACATATATATAGGCATCAGGGGATGTGTCGCCGGCTTTTTTCTGCCATTGAATTGGCTCTTTGCTCTTTGAAGGTTGAGAAACTGGTTATTCCTGCAATTTCTGAACTCATTCAGACATGGACAACAGTTTTTGGCTTCACACGTCTTGAGGAATCACTCAGACAAGAAATGAAGTCTTTGAATATGTTGGTCTTCCCTGGCATAGATATGTTACAGAAGCTGCTCATGCAAGAAGGAAAACTTGATGGTAATACAACCACTGCAGATGGTGTATTAGCAACAGGTGCTAAGAGGAAGGTTTTCAATAAGCCCAAAATGGCTGGTAGGCTAGATGTGGATTTCCCTGCTGTACACAATCCTCATGGAAGTGATGCTGCTAGTTCAAATCCTGCCAATGAGATAAATAATGAATGTAGTGCTGCTTCTCAAGAGCTAAACACTCAAGTTTTGGTTGATGGGACTGTGTGCTCCAAATATTGCTCTGAGGAAAGATTATCTGATGATTCTGTTTCAGATAAATGTGTTCCTTCTTCTAGTACTAGTCATGGTGTACTGGAAACGGACAATAAAATAGCTGCAGGTTCTCCAGTTAATGATAAATTGCATTCTTCTCCCAAATGTCAAATCAGTTCACAAAATGAAAAATCTGTGACTGGTCCTCCATTAGATGCCACGGATTGCCATGAAATTCCATTTTTGGGTCAGGAAACTGCTTGTTCTGGTCCTGGTTCTACCGAAGACCTGGTTGAACCTGTTTCTGACAGGAAATGTCAAATGGCCGCTGATATAAACTGTGATCGAGTTGCAGAAAATGCTTTGTCTTCTAAAGAGGTTGGTATGAATGACGCCTTTGATGAGGTTCTTGAAGCTTGTCCTTCAGTAAATTTATCTCAAGATAAAATTACCAAGGAGAATAATGAAAATATAGATGTCTCTGGTTCTGTTCTTGGTCATGCTGGTGACAGTTTCTTGCAAGTAAGATCTGATCTGAATTGTGATACTGCACCAGAGGGAAAAAAGAATTTACATTTGGGCACAGGAGTTGCTTCAAATAAAATTCACGTTGATGAAACTGGCCTAAATGCATCCGGTCATAGTTCTGAGACTGATCCAGTATAA 3882 0.4129 MEPGTRSGAPSGCLIVRKKEDRVPGSSTSPKLYESKKMMKRPKVVVDSTDSESCDDELPMPPASRLGPETIRVCTGLTALQRRQERGGIDISRKRERVEQLGCNGDGMLEENNGSEGREMKRNKLDVFDFNEYDGTSAEMMRMRHFDNNKVDLGGRRRFMGGMHAARSGIHREFESGSSRNVVNKRKNSYNNRESGLYLGDNVDHSRLKTNIDGAKRPAPLLRDKLNSDESVRVQGKNGVLKVMVNKKKAGKLLEHSDHHKHVKSRHSLRTERTSKRNAHICPSSHLETKPVEEHCLLARPKKKQIASRKQLSCMDSKGGEQNSDNSDMSPSLGVKNSEVRKSSKKIISEDEQSPKHEKLPTTNTKEVKVKRGSGTEKQKLREQIREMLLNAGWTIDYRPRRNRDYLDAVYIHPGGTAYWSIIKAYDALQKQLNDDDHEAKPKGEASSFAPITNDVLSQLTRNTRKKMEKDLKNKERDDSESDSGEELHITRSSGRKRCKNDMDSDSNDEKLSSFLKQGSKSRKTRMTENAVTHHSSGGTEKSLSGNEPHLLHGRKSRRHGRCTLLVRNSNKGTNSEFGDFVPYTGKRTVLSWLIDSGVVQLSQKVQYCKRKRVLLEGWITRDGIHCVCCSKILTVSKFEQHAGSKLHQPYQNIFLKSGVSLLQCQIDAWNRQENYEKISFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQNCLDIQMLPPGEWHCLNCTCKFCGIASVTINKEDEPAAYALHTCALCEKKYHNSCTKEVDAVHTNPNMSGTYFCGKDCKELFEHLKKYLSTKYELDAGFTWSLIHRTDEDSEAASRGVTQGVECNSKLAVALTVMDECFLPVIDRRSGINLIHNVLYNSGSNFNRLNYNGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHIYRHQGMCRRLFSAIELALCSLKVEKLVIPAISELIQTWTTVFGFTRLEESLRQEMKSLNMLVFPGIDMLQKLLMQEGKLDGNTTTADGVLATGAKRKVFNKPKMAGRLDVDFPAVHNPHGSDAASSNPANEINNECSAASQELNTQVLVDGTVCSKYCSEERLSDDSVSDKCVPSSSTSHGVLETDNKIAAGSPVNDKLHSSPKCQISSQNEKSVTGPPLDATDCHEIPFLGQETACSGPGSTEDLVEPVSDRKCQMAADINCDRVAENALSSKEVGMNDAFDEVLEACPSVNLSQDKITKENNENIDVSGSVLGHAGDSFLQVRSDLNCDTAPEGKKNLHLGTGVASNKIHVDETGLNASGHSSETDPV* 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0834 1293 ProSitePatterns Zinc finger PHD-type signature. 696 735 IPR019786 -
Lan8g0834 1293 PANTHER PHD FINGER FAMILY PROTEIN 1 1137 - -
Lan8g0834 1293 SUPERFAMILY FYVE/PHD zinc finger 684 741 IPR011011 -
Lan8g0834 1293 MobiDBLite consensus disorder prediction 300 377 - -
Lan8g0834 1293 MobiDBLite consensus disorder prediction 1089 1141 - -
Lan8g0834 1293 Coils Coil 458 478 - -
Lan8g0834 1293 MobiDBLite consensus disorder prediction 310 338 - -
Lan8g0834 1293 MobiDBLite consensus disorder prediction 435 548 - -
Lan8g0834 1293 MobiDBLite consensus disorder prediction 1092 1107 - -
Lan8g0834 1293 Pfam Tify domain binding domain 618 668 IPR032308 -
Lan8g0834 1293 MobiDBLite consensus disorder prediction 252 286 - -
Lan8g0834 1293 MobiDBLite consensus disorder prediction 34 50 - -
Lan8g0834 1293 MobiDBLite consensus disorder prediction 462 511 - -
Lan8g0834 1293 MobiDBLite consensus disorder prediction 339 377 - -
Lan8g0834 1293 MobiDBLite consensus disorder prediction 1 68 - -
Lan8g0834 1293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 684 794 IPR013083 -
Lan8g0834 1293 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1137 - -
Lan8g0834 1293 CDD PHD2_CHD_II 696 735 - -
Lan8g0834 1293 MobiDBLite consensus disorder prediction 1122 1140 - -
Lan8g0834 1293 Pfam PHD-finger 696 738 IPR019787 -
Lan8g0834 1293 SMART PHD_3 695 736 IPR001965 -
Lan8g0834 1293 SMART PHD_3 737 796 IPR001965 -
Lan8g0834 1293 ProSiteProfiles Zinc finger PHD-type profile. 693 738 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0834 Lan-Chr8 10174829 10182768 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0834 11 997 PHD Transcription Factor Family AT4G14920 48.764 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan8g0834 TDBD 3.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0834 - - mtr:MTR_1g103830 1570.83