Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0812 ATGGTGAGGGGAAAGATTCAGATGAAAAAAATTGAGAATGAAAACACCCGTCAAGTGACATTTTCAAAGCGTAAAAGTGGCCTTGTAAAGAAATCTTATGAGCTATCTGTTCTTACTGATGCCCAAGTTGCTCTAATAATCTTCTCACAAAAAGGGAGGCTTTATGAGTTCTCTTCAAATTCTGACATCAGACAAATTGTGGAACGATACGGTAATTATACCAATCGTGGTACAGCCAATATGTTTAGAGAGGAATTTATCCAGCAACGGAAGTTTGATTCCGCAAGCTTGGCAGAGAAGATTGAGCTTCTTGAACTTTCTAAAAGAAAGATGGTGGGACATGGGTTGAGTTCTTATTCAATTGATGAACTCCAAGGAATTGAGGATCAGTTGCAGAGAAGTTTGGAAAGCATCAGATTGAGAAAGGCTCAACTATACAAGGAGCACATTGAACAACTACATACGCAGGAGAGAAACTTGGTCAAAGACAATGCTGAATTAAGTGCATTGTTATTGGAAAAATTATCACAGAAGACACGAGCACAAGAAACAGCACCACACACTCCTAGAAACCAGAGTTTGGGTGTGGAGACACAATTATTTATTGGACTGCCACACCATCCTTGCTGA 630 0.3952 MVRGKIQMKKIENENTRQVTFSKRKSGLVKKSYELSVLTDAQVALIIFSQKGRLYEFSSNSDIRQIVERYGNYTNRGTANMFREEFIQQRKFDSASLAEKIELLELSKRKMVGHGLSSYSIDELQGIEDQLQRSLESIRLRKAQLYKEHIEQLHTQERNLVKDNAELSALLLEKLSQKTRAQETAPHTPRNQSLGVETQLFIGLPHHPC* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0812 209 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Lan8g0812 209 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan8g0812 209 PANTHER MADS BOX PROTEIN 1 205 - -
Lan8g0812 209 Coils Coil 121 148 - -
Lan8g0812 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan8g0812 209 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Lan8g0812 209 Pfam K-box region 90 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan8g0812 209 PANTHER MADS-BOX PROTEIN SOC1 1 205 - -
Lan8g0812 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan8g0812 209 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
Lan8g0812 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan8g0812 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan8g0812 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan8g0812 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0812 Lan-Chr8 10050290 10053449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0812 1 206 MADS-box Gene Family AT4G22950 48.095 1.26e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan8g0812 K-box 6.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0812 - - gmx:100800580 225.328