Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0811 ATGTTTCCCTACAATCATTTTCATTTTCTCGACCAACATCCTAGTAACCTTCATATATTGTCATCTGGGTCTCGTCCGGCGGCGGTGTCCGATGAGGAGGTGTTATTGGCGGCGAGCCACCCTAAGAAGCGTGCCGGGAGGAAGAAGTTCAAGGAGACACGCCACCCTGTTTACCGAGGCGTCAGGCGCAGGGACTCTGGCAAGTGGGTGTGTGAGGTACGTGAGCCAAATAAGAAGACAAGGATTTGGCTCGGAACATTCCTCACGGCGGAGATGGCGGCGCGTGCACATGACGTTGCGGCGATTGCTCTTAGGGGCAAGTCCGCGTGCCTCAACTTTGCGGATTCAGCGTGGCGACTTCCGGTTCCGGCGACATCAGAAGCCAAAGATATCCAGAAGGCGGCGGCGGAAGCGGCGAAGGCTTTTCGACCGGTGACAGATGAAGGGAGATTGGTTAACGAGGTGGCGGTGACATCAGCGCCGGTCACGATGGCGGAGGAGCAAGAGGAAGAGTCATCATCGGTGCCGGAGTGGCTTAGGAATATGGTGTTGATGTCGCCAACACATTATTATAACATGGGAAGTGAGTATGGTAGTGTCGACGTGGAATTTGATGACGCTGAAGTCTCATTGTGGAATTATTCTATTTGA 651 0.5361 MFPYNHFHFLDQHPSNLHILSSGSRPAAVSDEEVLLAASHPKKRAGRKKFKETRHPVYRGVRRRDSGKWVCEVREPNKKTRIWLGTFLTAEMAARAHDVAAIALRGKSACLNFADSAWRLPVPATSEAKDIQKAAAEAAKAFRPVTDEGRLVNEVAVTSAPVTMAEEQEEESSSVPEWLRNMVLMSPTHYYNMGSEYGSVDVEFDDAEVSLWNYSI* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0811 216 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
Lan8g0811 216 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Lan8g0811 216 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 15 216 IPR045277 GO:0003700
Lan8g0811 216 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Lan8g0811 216 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 15 216 - -
Lan8g0811 216 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Lan8g0811 216 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Lan8g0811 216 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Lan8g0811 216 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Lan8g0811 216 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0811 Lan-Chr8 10046426 10047300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0811 36 214 AP2-EREBP Transcription Factor Family AT4G25470 58.763 5.81e-65 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan8g0811 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0811 - K09286 aprc:113872706 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0811 8 10046426 10047300 Lan4g1880 4 27141728 27142679 LSH