Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0810 ATGGATGATCAAAACCCTCAGCCACCACGTCCTCCTTCTATACAAGTCCCTCAATTCTCTATTTCCTCATCATCATCAGCAACACCAACACCAACAACGCCAATACCAACTTCTGGAGACCCAAATGCCACCGTTAGATACCGTGGAACACGGTGCCGGAGCGGGAAATGGGTGTGTGAGATACGTGAGCCACGTAAAACAAAGCGCATTTGGCTTGGAACATATCAAACACCTGAAATGGCTGCAGCTGCATATGATGTAGCAGCTCTAGCATTGAAGGGGCCAAACACCCCCCTTAATTTCCCCAATTCCATTCTCTCATACCCTATTCCTAGGTCTTTGTCCCCAGCTGATATATGTGCTGCTGCTTCTGCTGCTGCTCAAGCTAGAATAGTGACACCCCAACAACACCAACAACAACTAGAAACTCAAAACCCTTGTGGTGGTACTGGAGTTAATGATGAGAGTGGCTCATCAAGTGCACAAGCACCACAAGAGTACATTGATGAGGATGAGCTTTTGAATATGCCTAATCTATTAAATGATATGGCTAGGGGAATGCAGAATGAAGAAAAATTGAGGATAATGATCACTTTCCCGATCATCACTGTTTTGGTGAAAGCTAGATGCCACCAATTTTAG 642 0.4517 MDDQNPQPPRPPSIQVPQFSISSSSSATPTPTTPIPTSGDPNATVRYRGTRCRSGKWVCEIREPRKTKRIWLGTYQTPEMAAAAYDVAALALKGPNTPLNFPNSILSYPIPRSLSPADICAAASAAAQARIVTPQQHQQQLETQNPCGGTGVNDESGSSSAQAPQEYIDEDELLNMPNLLNDMARGMQNEEKLRIMITFPIITVLVKARCHQF* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0810 213 Pfam AP2 domain 51 94 IPR001471 GO:0003700|GO:0006355
Lan8g0810 213 Gene3D AP2/ERF domain 45 104 IPR036955 GO:0003700|GO:0006355
Lan8g0810 213 MobiDBLite consensus disorder prediction 135 164 - -
Lan8g0810 213 MobiDBLite consensus disorder prediction 1 15 - -
Lan8g0810 213 MobiDBLite consensus disorder prediction 1 47 - -
Lan8g0810 213 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Lan8g0810 213 MobiDBLite consensus disorder prediction 16 44 - -
Lan8g0810 213 ProSiteProfiles AP2/ERF domain profile. 46 102 IPR001471 GO:0003700|GO:0006355
Lan8g0810 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 42 187 - -
Lan8g0810 213 SMART rav1_2 46 108 IPR001471 GO:0003700|GO:0006355
Lan8g0810 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 42 187 - -
Lan8g0810 213 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0810 Lan-Chr8 10038729 10040096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0810 47 187 AP2-EREBP Transcription Factor Family AT5G52020 54.610 1.33e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan8g0810 AP2 1.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0810 - - gmx:100813560 193.356