Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0809 ATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGAGAGTCAGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGGTGGAAAGGGTGGATATGAAGTCTGGATTTGCTTTTATCTACATGGAAGATGATAGAGATGCTGAGGCTGCAATTCGTGCTCTTGACAGAGTAGAATTTGGTCGGAAGGGGCGCAGACTTCGCGTGGAATGGACAAAGCAAGAACGTGGTGTTAGAAGGCCCGCTCCCAGTTCAAGAAGATCTTCAGGGAATGGGAGGCCATCAAAGACCTTATTTGTAATCAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAGCCGTATGGTAAGATAGTCAATGTGAGGATTAGAAGAAATTTTGCTTTTGTTGAGTATGAATCAGAGGATGATGCTCGCAAAGCTTTGGAAGCTACAAATATGAGCAAGTTGCTGGATCGAGTTATTTCAGTTGAATTTTCTGTCAAAGATGGTGATAGGCGAGATGGATATAGCCCTGAGAGAGGCCATGATCTACAGCGCAATAGAAGCCGTGATGGAAGACGGTCACCCAGTCCTTATCGTAGAGAAAGGGATAGTCCTGATTATGGCCGTGGGCCTAGTCCATATAAGAGGGAGAGGAGCAGCCCTGACTATGGTCATGGCCGTAGCCGTAGCCGAAGCCGAAGCCGAAGCCCCCTTCGAAGGCAGCATGCTAGCCCTGCTTATGGGCGTAGAAGCCCTAGTCCATATAGAAGAGAGAGGGATGGCTCTGACCCCGTTCGTGGCTCCAGCCGCAGTCCTTTTCACAAGGAGCAAGTAAGAACTGATGACCATAGCATTTCTCCTTCCCATAAAAGTCTTGATGGCAGTGAGAGAACAAGTCCTCAAAATGGTCGTGGTTCTAGCCGCAGTCCTTATGATCTGGAGAAGGCGGCTAGTCCTGAAAATGGCCATGGCTTCAAACATAGTCCTGAAGAAGAAGGAGCCATCAGCCCTGACAATGGATATGGAGGGAGCCCAAATGCTCTGCCTGATAGTCCCCAGCTTCAACGATACCGCAGCCAGTCCCCCCCTGCAGAAGACTGA 1101 0.4859 MRPIFCGNFEYDARESELERLFRRYGKVERVDMKSGFAFIYMEDDRDAEAAIRALDRVEFGRKGRRLRVEWTKQERGVRRPAPSSRRSSGNGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVNVRIRRNFAFVEYESEDDARKALEATNMSKLLDRVISVEFSVKDGDRRDGYSPERGHDLQRNRSRDGRRSPSPYRRERDSPDYGRGPSPYKRERSSPDYGHGRSRSRSRSRSPLRRQHASPAYGRRSPSPYRRERDGSDPVRGSSRSPFHKEQVRTDDHSISPSHKSLDGSERTSPQNGRGSSRSPYDLEKAASPENGHGFKHSPEEEGAISPDNGYGGSPNALPDSPQLQRYRSQSPPAED* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0809 366 MobiDBLite consensus disorder prediction 291 308 - -
Lan8g0809 366 MobiDBLite consensus disorder prediction 168 366 - -
Lan8g0809 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Lan8g0809 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Lan8g0809 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Lan8g0809 366 MobiDBLite consensus disorder prediction 74 96 - -
Lan8g0809 366 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 310 - -
Lan8g0809 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Lan8g0809 366 Gene3D - 84 214 IPR012677 -
Lan8g0809 366 SUPERFAMILY RNA-binding domain, RBD 79 175 IPR035979 GO:0003676
Lan8g0809 366 Gene3D - 1 83 IPR012677 -
Lan8g0809 366 SMART rrm1_1 3 70 IPR000504 GO:0003723
Lan8g0809 366 SMART rrm1_1 97 163 IPR000504 GO:0003723
Lan8g0809 366 MobiDBLite consensus disorder prediction 319 333 - -
Lan8g0809 366 MobiDBLite consensus disorder prediction 168 229 - -
Lan8g0809 366 MobiDBLite consensus disorder prediction 346 366 - -
Lan8g0809 366 CDD RRM1_AtRSp31_like 2 73 - -
Lan8g0809 366 SUPERFAMILY RNA-binding domain, RBD 4 93 IPR035979 GO:0003676
Lan8g0809 366 PANTHER - 4 310 - -
Lan8g0809 366 MobiDBLite consensus disorder prediction 252 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0809 Lan-Chr8 10029797 10033615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0809 4 172 Eukaryotic Initiation Factors Gene Family AT1G49760 20.942 1.90e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0809 K12893 - gmx:100796509 551.206