Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0801 ATGGGGAGCCAGCAAGGAGAAAAAGGAAAACCAAAACACAGGAAGGGGTTATGGTCACCTGAAGAAGACAATAAGCTCAGAAACCATATCCTTAACCATGGTCATGGTTGTTGGAGCTCTGTTTCCATTAAGGCAGGGTTACAAAGGAATGGAAAGAGCTGCAGATTAAGGTGGATTAACTACTTAAGGCCAGGATTAAAGAAAGGGATGTTTAGCAAACAGGAGGAGGAGACAATCATGACCCTCCACAGCATGTTGGGCAATAAGTGGTCTCAGATTGCGCAACATTTAGCCGGAAGGACCGATAATGAAATAAAAAACTACTGGCATTCATATCTGAAAAAGAGAGTGGCCAAAGCTAAGGAAATGGAATCTCATATTCAAATTCAGTATGCCACCTCAAGCTCAGATACCTTAGACTCTTCACCCTCTCACCAAAAACTTGCAACACAAGGCACCCAGAATATAAACTTCACCAAAGAGGCAAATCAAAGCACCTTACCAAAACTGTTATTTGCTGAGTGGCTTTCAGTTGATCATGTAAGTTCTGGCAACTCTGCAATTTCATATGACTCTTTGAACTTAAGGAATGGGTTCAATCAAAATCAAACATTTCAAGAAGCTCCAATGCATTATTTGCCAGAAGGACCCTTTGGTGGAGGAGAGTATAATGATAATAATAGTTTAACTCACATTTCAGCCACTGAAATGTTCAATTCACAGCTTAAGTTTGAAAATCAAATTGTGGCCAATGGATTCATCCATTGTATACCTGGGGTTGATTTAAGTAGCAATATCAGCATAAGCAATTATGCTATATAA 822 0.3966 MGSQQGEKGKPKHRKGLWSPEEDNKLRNHILNHGHGCWSSVSIKAGLQRNGKSCRLRWINYLRPGLKKGMFSKQEEETIMTLHSMLGNKWSQIAQHLAGRTDNEIKNYWHSYLKKRVAKAKEMESHIQIQYATSSSDTLDSSPSHQKLATQGTQNINFTKEANQSTLPKLLFAEWLSVDHVSSGNSAISYDSLNLRNGFNQNQTFQEAPMHYLPEGPFGGGEYNDNNSLTHISATEMFNSQLKFENQIVANGFIHCIPGVDLSSNISISNYAI* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0801 273 CDD SANT 18 62 IPR001005 -
Lan8g0801 273 CDD SANT 71 113 IPR001005 -
Lan8g0801 273 Gene3D - 70 142 - -
Lan8g0801 273 PANTHER MYB TRANSCRIPTION FACTOR 154 268 - -
Lan8g0801 273 PANTHER MYB TRANSCRIPTION FACTOR 1 153 - -
Lan8g0801 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Lan8g0801 273 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Lan8g0801 273 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Lan8g0801 273 Gene3D - 15 67 - -
Lan8g0801 273 SMART sant 67 115 IPR001005 -
Lan8g0801 273 SMART sant 14 64 IPR001005 -
Lan8g0801 273 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Lan8g0801 273 MobiDBLite consensus disorder prediction 7 21 - -
Lan8g0801 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lan8g0801 273 MobiDBLite consensus disorder prediction 1 21 - -
Lan8g0801 273 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lan8g0801 273 PANTHER MYB DOMAIN PROTEIN 55 154 268 - -
Lan8g0801 273 PANTHER MYB DOMAIN PROTEIN 55 1 153 - -
Lan8g0801 273 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0801 Lan-Chr8 9993602 9995733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0801 8 248 MYB Transcription Factor Family AT3G48920 46.939 4.96e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan8g0801 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0801 K09422 - gmx:778167 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0801 8 9993602 9995733 Lan20g0048 20 260063 262681 LSH
Lan8g0801 8 9993602 9995733 Lan4g1867 4 27072552 27074767 LSH