Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0783 ATGGAAGTGGAGGAAAATACCACCTCAACTACTGCTTCTGAATCTTCTATACCAGCCTCTGGTGCTCAAACAATTCTGCCGCTTCACCCATTACAACCTATTATTCCACCACTTATTGTGCCTCCTATAGCTCCAATTCCTGTTGTCCACACACATGCATCACTTCCAGTTCGGCCACCGGTAATTAGGCCACCTCCACCCGTGTTGCATAATGGCGAGGCTGGATCAAGTGACTCTGATGATTCAGATAACGATGATTCAGTTCACGGGATCAACAAGGGTATGGGGGATTACGAGATATCGGAGGAGAGTAGACTGGTAAGAGAGCGTCAGGAGAAAGCAATGCAGGAGCTCCTTTTGAAGAGGCGTGCTGCTGCTCTTGCTGTTCCCACCAATGACATGGCTGTGCGAACTCGTCTTCGCCGCCTTGGTGAACCTATAACTCTCTTTGGTGAAAGGGAGATGGAAAGACGAGACAGGTTGCGAATGATTATGGCTAAACTCGATGCTGAAGGTCAGTTGGAAAAGTTGTTGAAGGCTCATGAAGATGAAGAGGCTGCTGCTTCTGCTCTGAAAGATGAGGTTGAGGGGGAGGAACTACAGTATCCCTTTTACACTGAAGGCTCAAAGTCTCTCCTGAATGCTAGAATTGATATTGCTAAATATTCTTTAGTTAGGGCAGCATTACGTCTTCAGCGTGCACGAAGAAGAAGAGATGATCCGGATGAAGATATGGATTCAGAGATGGACTGGGCACTGAAGCAGGCTGCAAATTTGAGTCTTGATTTCAGCGAAATTGGAGATGATCGACCACTTTTTGGTTGTTCCTTCTCCCCTGATGGAAAAGCACTTGCTACATGTTCTTTAACTGGAGCTGCCAAGTTGTGGAGCATGCCTAAACTCACAAAAATTTCTACACTGAAGGGTCACACAGAGCGTGCTACTGATGTTGCTTATTCTCCTGTGCACAACCATATAGCGACTGCATCGGCTGATCGGACTGCAAGGTATTGGAATGACCAAGGAGCTCTCTTAAAGACATTTGAGGGTCATCTTGACCGTCTTGCACGAATTGCTTTCCATCCATCTGGGAAGTACTTGGGCACTGCCAGCTATGACAAGACATGGAGATTATGGGATATCGAAACAGGAGAGGAGTTGCTTCTTCAAGAAGGTCATAGTCGGAGCGTATACGGTTTAGCTTTCCACCATGATGGATCTTTAGCTGCATCTTGTGGACTGGATGCTCTTGCTCGTGTTTGGGACCTCCGAACTGGGAGAAGTGTTCTTGCATTGGAAGGTCATGTCAAGCCGGTTCTTGGCATCAGTTTTTCACCTAATGGATATCATTTAGCCACCGGTGGCGAGGACAACACTTGTCGCATTTGGGATTTGAGGAAGAAGAAATCCTTGTACACCATTCCTGCGCACTCTAATTTAATATCACAAGTTAAATTTGAGCCACAAGAGGGTTACTTCTTGGTAACTGCCTCATATGACATGACAGCAAAGGTTTGGTCAGCCCGTGACTTTAAGCCTGTGAAGACTCTGTCTGGGCATGAAGCAAAAGTTACTTCTGTAGATGTTCATGGAGATGGCAGTATTGCTACTGTCTCCCATGATCGCACCATAAAGTTGTGGTCCAGCAATGTGACTAGTGAACAAGCTATGGATGTCGATTAG 1683 0.4629 MEVEENTTSTTASESSIPASGAQTILPLHPLQPIIPPLIVPPIAPIPVVHTHASLPVRPPVIRPPPPVLHNGEAGSSDSDDSDNDDSVHGINKGMGDYEISEESRLVRERQEKAMQELLLKRRAAALAVPTNDMAVRTRLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLLKAHEDEEAAASALKDEVEGEELQYPFYTEGSKSLLNARIDIAKYSLVRAALRLQRARRRRDDPDEDMDSEMDWALKQAANLSLDFSEIGDDRPLFGCSFSPDGKALATCSLTGAAKLWSMPKLTKISTLKGHTERATDVAYSPVHNHIATASADRTARYWNDQGALLKTFEGHLDRLARIAFHPSGKYLGTASYDKTWRLWDIETGEELLLQEGHSRSVYGLAFHHDGSLAASCGLDALARVWDLRTGRSVLALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSVDVHGDGSIATVSHDRTIKLWSSNVTSEQAMDVD* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0783 560 SMART pr04_2 131 184 IPR014906 -
Lan8g0783 560 MobiDBLite consensus disorder prediction 82 97 - -
Lan8g0783 560 ProSitePatterns Trp-Asp (WD) repeats signature. 367 381 IPR019775 -
Lan8g0783 560 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 390 427 - -
Lan8g0783 560 PANTHER BNAC04G01920D PROTEIN 97 553 - -
Lan8g0783 560 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 348 385 - -
Lan8g0783 560 Gene3D - 251 430 IPR015943 GO:0005515
Lan8g0783 560 SMART WD40_4 258 297 IPR001680 GO:0005515
Lan8g0783 560 SMART WD40_4 510 548 IPR001680 GO:0005515
Lan8g0783 560 SMART WD40_4 341 380 IPR001680 GO:0005515
Lan8g0783 560 SMART WD40_4 300 339 IPR001680 GO:0005515
Lan8g0783 560 SMART WD40_4 467 507 IPR001680 GO:0005515
Lan8g0783 560 SMART WD40_4 383 422 IPR001680 GO:0005515
Lan8g0783 560 SMART WD40_4 425 464 IPR001680 GO:0005515
Lan8g0783 560 SUPERFAMILY WD40 repeat-like 263 547 IPR036322 GO:0005515
Lan8g0783 560 PRINTS G protein beta WD-40 repeat signature 367 381 IPR020472 -
Lan8g0783 560 PRINTS G protein beta WD-40 repeat signature 451 465 IPR020472 -
Lan8g0783 560 PRINTS G protein beta WD-40 repeat signature 535 549 IPR020472 -
Lan8g0783 560 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 307 339 - -
Lan8g0783 560 ProSiteProfiles Trp-Asp (WD) repeats profile. 432 473 IPR001680 GO:0005515
Lan8g0783 560 Coils Coil 167 201 - -
Lan8g0783 560 Gene3D - 107 176 IPR036285 -
Lan8g0783 560 CDD WD40 271 548 - -
Lan8g0783 560 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 474 507 - -
Lan8g0783 560 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 431 IPR001680 GO:0005515
Lan8g0783 560 PANTHER WD40 REPEAT PROTEIN 97 553 - -
Lan8g0783 560 MobiDBLite consensus disorder prediction 56 97 - -
Lan8g0783 560 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 517 548 - -
Lan8g0783 560 ProSiteProfiles Trp-Asp (WD) repeats profile. 474 516 IPR001680 GO:0005515
Lan8g0783 560 ProSitePatterns Trp-Asp (WD) repeats signature. 451 465 IPR019775 -
Lan8g0783 560 ProSiteProfiles Trp-Asp (WD) repeats profile. 517 548 IPR001680 GO:0005515
Lan8g0783 560 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 432 466 - -
Lan8g0783 560 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 389 IPR001680 GO:0005515
Lan8g0783 560 SUPERFAMILY PRP4-like 114 169 IPR036285 -
Lan8g0783 560 ProSitePatterns Trp-Asp (WD) repeats signature. 409 423 IPR019775 -
Lan8g0783 560 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 339 IPR001680 GO:0005515
Lan8g0783 560 Pfam WD domain, G-beta repeat 429 464 IPR001680 GO:0005515
Lan8g0783 560 Pfam WD domain, G-beta repeat 512 548 IPR001680 GO:0005515
Lan8g0783 560 Pfam WD domain, G-beta repeat 343 380 IPR001680 GO:0005515
Lan8g0783 560 Pfam WD domain, G-beta repeat 303 339 IPR001680 GO:0005515
Lan8g0783 560 Pfam WD domain, G-beta repeat 470 507 IPR001680 GO:0005515
Lan8g0783 560 Pfam WD domain, G-beta repeat 391 422 IPR001680 GO:0005515
Lan8g0783 560 Gene3D - 431 558 IPR015943 GO:0005515
Lan8g0783 560 Pfam pre-mRNA processing factor 4 (PRP4) like 136 162 IPR014906 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0783 352 547 U-box Gene Family AT2G33340 21.818 5.23e-10 60.1