Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan8g0778 | ATGGCTTCCGATCTAGAATTGAAGGCTAAAGAGGCTTTTGTGGATGATCACTACGATCTCGCCGTTGAACTTCTCACTCAGGCTATTCAACTCAGCCCCAACAACGCTCATCTCTATGCAGACCGTGCCCAAGCCAATATCAAACTCCAAAACCTCACTGAGGCTGTTGCCGATGCAAACAAGGCAATTGAGTTGAATCCTTCTCTATCAAAAGCATATTTCCGCAAAGGTACTGCATGCCTCAAGCTCGAGGAATATCAAACTGCTAAGGCAGCTTTTGAGATTGGTGCTTCGTTGGCTCCGGGAGAATCAAGATTCACTAATTTGATCAAAGAATGTGATGAGCTCATTGCAGAAGAATCCGGTGCCGTCCCCGTACCAGAAAATACCACATCACATGATGTATCTACAGAAGATGTTCAGCCCGAGAAAGATGTTCCAGAGCTGCAGTCAGTAACAGTGGCTAAACCTAAATACAGACATGAATTTTACCAGAAACCTGATGAAGTGGTTGTTACCATATTCGCAAAGGGCATCCCACGGAACAGCATTTCTGTTGACTTTGGTGAACAAATTCTAAGTGTTAGCATTAATGTCCCGGGCGAGGATATATACACCTTTCAACCTCGCTTATTTGGAAAGATCATACCTGCTAAATGCCGGTTCGAAGTTTTGTCTACCAAAATTGAAATCCGCCTTGCTAAAGTAGAACTTATTCACTGGACTTCTCTAGAATTCAGTGGAGGTGTTATAGCTCCCCAGAGGGCTAATTCTTCATCAGTTGCTGGAAGTCAAAGACCTACTTACCCTTCCTCAAAACCAAAAAGAGTAGATTGGGACAAGCTGGAAGCTCAAGTTAAGAAAGAGGAGAAGGAAGAAAAACTTGACGGCGATGCAGCGTTGAACAAATTTTTCCGTGAGATATACCAGGATGCAGATGAGGACACAAGAAAAGCTATGAAAAAATCATTTGTGGAGTCTAATGGAACAGTTCTGTCTACAAACTGGAAAGAAGTTGGATCGAAGAAGGTAGAGGGAAGTCCACCCGACGGTATGGAGCTGAAGAAATGGGAACATTAA | 1080 | 0.4343 | MASDLELKAKEAFVDDHYDLAVELLTQAIQLSPNNAHLYADRAQANIKLQNLTEAVADANKAIELNPSLSKAYFRKGTACLKLEEYQTAKAAFEIGASLAPGESRFTNLIKECDELIAEESGAVPVPENTTSHDVSTEDVQPEKDVPELQSVTVAKPKYRHEFYQKPDEVVVTIFAKGIPRNSISVDFGEQILSVSINVPGEDIYTFQPRLFGKIIPAKCRFEVLSTKIEIRLAKVELIHWTSLEFSGGVIAPQRANSSSVAGSQRPTYPSSKPKRVDWDKLEAQVKKEEKEEKLDGDAALNKFFREIYQDADEDTRKAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEH* | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan8g0778 | 359 | MobiDBLite | consensus disorder prediction | 256 | 276 | - | - | |
| Lan8g0778 | 359 | PANTHER | PROTEIN SGT1 HOMOLOG | 1 | 358 | IPR044563 | GO:0051087 | |
| Lan8g0778 | 359 | Pfam | CS domain | 160 | 235 | IPR007052 | - | |
| Lan8g0778 | 359 | SUPERFAMILY | HSP20-like chaperones | 153 | 254 | IPR008978 | - | |
| Lan8g0778 | 359 | MobiDBLite | consensus disorder prediction | 256 | 271 | - | - | |
| Lan8g0778 | 359 | ProSiteProfiles | TPR repeat profile. | 36 | 69 | IPR019734 | GO:0005515 | |
| Lan8g0778 | 359 | Pfam | SGS domain | 278 | 357 | IPR007699 | - | |
| Lan8g0778 | 359 | MobiDBLite | consensus disorder prediction | 340 | 359 | - | - | |
| Lan8g0778 | 359 | ProSiteProfiles | CS domain profile. | 156 | 245 | IPR007052 | - | |
| Lan8g0778 | 359 | Gene3D | Tetratricopeptide repeat domain | 1 | 123 | IPR011990 | GO:0005515 | |
| Lan8g0778 | 359 | Pfam | Tetratricopeptide repeat | 71 | 94 | IPR019734 | GO:0005515 | |
| Lan8g0778 | 359 | Pfam | Tetratricopeptide repeat | 36 | 68 | IPR019734 | GO:0005515 | |
| Lan8g0778 | 359 | SUPERFAMILY | TPR-like | 5 | 112 | IPR011990 | GO:0005515 | |
| Lan8g0778 | 359 | SMART | tpr_5 | 36 | 69 | IPR019734 | GO:0005515 | |
| Lan8g0778 | 359 | SMART | tpr_5 | 70 | 103 | IPR019734 | GO:0005515 | |
| Lan8g0778 | 359 | SMART | tpr_5 | 2 | 35 | IPR019734 | GO:0005515 | |
| Lan8g0778 | 359 | Coils | Coil | 42 | 62 | - | - | |
| Lan8g0778 | 359 | CDD | p23_CS_SGT1_like | 162 | 245 | - | - | |
| Lan8g0778 | 359 | Gene3D | - | 157 | 247 | IPR008978 | - | |
| Lan8g0778 | 359 | PANTHER | PHOSPHATASE-RELATED | 1 | 358 | - | - | |
| Lan8g0778 | 359 | ProSiteProfiles | SGS domain profile. | 268 | 359 | IPR007699 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan8g0778 | Lan-Chr8 | 9892477 | 9896185 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan8g0778 | 1 | 101 | U-box Gene Family | AT3G07370 | 28.571 | 2.03e-06 | 47.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan8g0778 | K12795 | - | gmx:100780174 | 558.14 |