Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0769 ATGGAAGATCTTCTTAGCTATGGGAATGTCGACTGTGATATCCACCAGGCATTGGTTGCTTTGAAAAAGGGTGCTCAACTGTTTAAATATGGTCGTAAGGGAAAGCCCAAGTCTTGTCCATTTAGGCTTTCCGATGATGAATCATCGTTAATCTGGATTTCAAGTAGTGGAGAAAGAAGTCTTAAGTTATCTTCTGTCTCAAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACATTATCTGCCTCCTGAGAAGGACTGTTTTTTATCGTTTTCACTTATTTATAACAACGGGAAGCGGTCCCTTGACTTGATTTGCAAGGATAAAGTTGAGGCAGACGTGTGGATTGTTGGTCTCAAAACACTAATATCTTCTGGTCAAGGTGGGCGGTCCAAAATTGATGGATGGAGTGATGGGGGCTTATATCTTGATGATAATACAGATTTAACATCAAGCAGTACCAGTGAAAGTTCAGCTAGTGCTTCGCAAGACATCAGTTATCCTAACATTTCCATGAGTCTGCCAAATACTTCTCCAAAGTCCTTTCCACCTGAGAATACCTTAAAATTTGAAAGGTCCCATGCACCAACAAACCCAACAAATATGCAAGTAAAAGGATCTAGTTCAGATGTTTTCCGTGTTAGTGTCTCAAGTGCTCCCAGCACACCCAGTCATGGCTCTGCACCAGATGATTACGATGCTCTTGGGGATGTATACATATGGGGTGAGGTTATCTGTGAGAACGTTGTGAAAGTCGGTGCTGATAAAAGTGTCATCTATGTTAGCCCGAAGGCAGATGTTCTCCTCCCCCGGCCACTGGAGTCAAATGTGGTTTTAGATGTACATCGAATAGCATGTGGTGTTAAGCATGCAGCTCTAGTCACAAGGCAAGGTGAAGTTTTTACATGGGGTGAAGAATCTGGAGGACGCCTTGGCCATGGTGTTGAGAAGAATGTTATTCAACCTCATCTAGTTGAAGCATTGGCTTCGTCAACTGTTGATTCTGTTTCCTGTGGGGAGTTCCATACCTGTGCTGTTACAATGGCCGGAGAACTTTATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGCCATGGCACTGATGTTAGTCATTGGATACCACAGAGAATTGCAGGTCCACTAGAGGGGCTTCACATTGCTTTAGTAACTTGTGGTCCATGGCACACCGCCTTGATAACTTCAACCGGTCAGCTTTTTACATTTGGTGATGGAACCTTTGGTGTTCTGGGACATGGAGACAGGGAAAATGTTTCATATCCTAGAGAAGTTGAATCTTTATCTGGGTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACCGCAGCTGTTGTAGAGGTTATTGTGACACAAACCAGTGCAAGTATATCTTCAGGTAAATTGTTTACATGGGGCGATGGTGATAAAAATCGCCTGGGACAAGGAGATAAGGAGGCCCAGCTTGAACCAACTTGTGTGCCTTCACTTATCGATTACAATTTTTATAAAGTTGCTTGTGGGCACAATTTGACAATAGGCCTGACTACATCTGGACATGTCTTTACAATGGGGAGCACTGTCTACGGTCAGCTTGGGAATCCCCAGTCTGATGGAAACCTGCCGTGTTTGGTTGAAGACAAGCTTGCTGGAGAATGCGTTGAAGAAATTGCGTGTGGAGCATATCATGTTGCTGTTTTAACATCCAGAAATGAAGTTTATACTTGGGGGAAGGGTGCAAATGGAAGATTGGGTCACGGGGATGTTGAAGATCGAAAAACACCAACTTTGGTTGAAGCTTTGAAGGATAGACAGGTGAAATACATTGCATGTGGTTCAAACTACTCTGCTGCAATATGCCTTCATAAGTGGGTATCCGGTACTGAGCAGTCTCAGTGCTCCACTTGTAGACAGGCATTTGGGTTCACTAGAAAAAGGCACAACTGTTATAATTGCGGACTTGTTCATTGTCATTCTTGCAGTTCAAGGAAAGCATTAAGAGCAACCCTGGCTCCTAATCCTGTGAAGCTATATCGTGTTTGTGATTCTTGTTATGCAAAGTTGAACAAGGTTGCAGAAGCTAGCAATATTAATCGGAGAAATGCTATGCCTCGTTTGTCGGGTGAAAACAAGGACAAGTTAGACAAGTCTGAGCTAAGATTGGCCAAGTTAGAAGTTCCTTCTGTTCTGCGTTTGATAAAGCAACTAGATAATATGGCAGCCAAACACGGGAAGAAGGCTGATACGCTCTCTCTGGTCGAGACCACACAAACACCTTCGCTACAGCTGAAAGATGTTGTCTTCTCTACTAATAATGATCTAAAAGGAAAAGTCCCGAGAGCTGTTCTTACATCATCTAGAGTGAGCTCCAGGTCTGTGTCCCCTTTCTCTAGAAGACCAAGCCCTCCTCGTTCAGCGACACCTATTCCAACAGCATCTGGACTTTCCTTCTCAAAAAATATTAATGATAGTTTGAAGAAAACAAATGAGCTTTTGAACCGAGAACTTCTGAAATTACGTTCTCAGGTTGAAACCCTGAGGCAGAGATGTGAACTGCAAGAATTAGAGATTCAAAAGTCAGCAAGAAAGACTCGGGAAGCTATGGCATTGGCTGCTGAGGAATCTTCCAAATCTAGTTCTGCAAAAGAAGTCATAAAGTCACTTGCAGCACAGCTAAAAGATCTGGCTGAGAGGCTTCCTCCCGGTTATGATGTTGAGAAGATCAGACCAACTTACCAGCCAAATGGTCTGGAGCCAAACACCATCCATTATCCGGACTCAAATGGGGAGCGCCATTCCAGGGCAGAGTCGATCAATGGCTCTAGTTTGGCTTCCATGGGGCATGTGATCTCTAATTGGAGACACGATCACCGTGATGCTAAATTGCCGAATGGCAGTGGTATGATTCAGGCAAGACGCAATATCCTGTCAGATACTACTGTTAATGGTCGGGATTCTATGGATTTCGAAGAGGATGAGAGCGGATTGACGTCAAGGAACTCTGATAGTAATCAAATTGAGGCAGAATGGATTGAACAATATGAACCTGGTGTCTATATAACACTCACTGCTCTGCAGGATGGAACCCGTGATCTGAAGCGAGTGCGCTTTAGTCAAAGAAGATTTGGAGAGCACCAAGCAGAGAGTTGGTGGTCAGAGAATCGCGACAAGGTATACGACAGGTACAATGTTCATATCACAGAAAAGTTTTCCAGCCAAGCTGCATGA 3234 0.4385 MEDLLSYGNVDCDIHQALVALKKGAQLFKYGRKGKPKSCPFRLSDDESSLIWISSSGERSLKLSSVSRIIPGQRTAVFQHYLPPEKDCFLSFSLIYNNGKRSLDLICKDKVEADVWIVGLKTLISSGQGGRSKIDGWSDGGLYLDDNTDLTSSSTSESSASASQDISYPNISMSLPNTSPKSFPPENTLKFERSHAPTNPTNMQVKGSSSDVFRVSVSSAPSTPSHGSAPDDYDALGDVYIWGEVICENVVKVGADKSVIYVSPKADVLLPRPLESNVVLDVHRIACGVKHAALVTRQGEVFTWGEESGGRLGHGVEKNVIQPHLVEALASSTVDSVSCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPQRIAGPLEGLHIALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQTSASISSGKLFTWGDGDKNRLGQGDKEAQLEPTCVPSLIDYNFYKVACGHNLTIGLTTSGHVFTMGSTVYGQLGNPQSDGNLPCLVEDKLAGECVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRQVKYIACGSNYSAAICLHKWVSGTEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRATLAPNPVKLYRVCDSCYAKLNKVAEASNINRRNAMPRLSGENKDKLDKSELRLAKLEVPSVLRLIKQLDNMAAKHGKKADTLSLVETTQTPSLQLKDVVFSTNNDLKGKVPRAVLTSSRVSSRSVSPFSRRPSPPRSATPIPTASGLSFSKNINDSLKKTNELLNRELLKLRSQVETLRQRCELQELEIQKSARKTREAMALAAEESSKSSSAKEVIKSLAAQLKDLAERLPPGYDVEKIRPTYQPNGLEPNTIHYPDSNGERHSRAESINGSSLASMGHVISNWRHDHRDAKLPNGSGMIQARRNILSDTTVNGRDSMDFEEDESGLTSRNSDSNQIEAEWIEQYEPGVYITLTALQDGTRDLKRVRFSQRRFGEHQAESWWSENRDKVYDRYNVHITEKFSSQAA* 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0769 1077 MobiDBLite consensus disorder prediction 148 208 - -
Lan8g0769 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 405 IPR000408 -
Lan8g0769 1077 MobiDBLite consensus disorder prediction 788 816 - -
Lan8g0769 1077 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 953 1067 - -
Lan8g0769 1077 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 948 - -
Lan8g0769 1077 MobiDBLite consensus disorder prediction 983 1005 - -
Lan8g0769 1077 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 392 402 IPR000408 -
Lan8g0769 1077 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 629 691 IPR017455 -
Lan8g0769 1077 Gene3D - 13 130 IPR011993 -
Lan8g0769 1077 Gene3D - 187 461 IPR009091 -
Lan8g0769 1077 SUPERFAMILY PH domain-like 12 124 - -
Lan8g0769 1077 MobiDBLite consensus disorder prediction 788 802 - -
Lan8g0769 1077 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 953 1067 - -
Lan8g0769 1077 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 948 - -
Lan8g0769 1077 Coils Coil 880 900 - -
Lan8g0769 1077 Gene3D - 462 635 IPR009091 -
Lan8g0769 1077 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 285 295 IPR000408 -
Lan8g0769 1077 SUPERFAMILY FYVE/PHD zinc finger 625 700 IPR011011 -
Lan8g0769 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 521 572 IPR000408 -
Lan8g0769 1077 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 444 454 IPR000408 -
Lan8g0769 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 299 350 IPR000408 -
Lan8g0769 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 573 624 IPR000408 -
Lan8g0769 1077 CDD FYVE_like_SF 634 687 - -
Lan8g0769 1077 Pfam Transcription factor BRX N-terminal domain 875 905 IPR027988 -
Lan8g0769 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 469 520 IPR000408 -
Lan8g0769 1077 MobiDBLite consensus disorder prediction 912 936 - -
Lan8g0769 1077 SMART fyve_4 624 692 IPR000306 GO:0046872
Lan8g0769 1077 SUPERFAMILY RCC1/BLIP-II 236 626 IPR009091 -
Lan8g0769 1077 Pfam Transcription factor regulating root and shoot growth via Pin3 1009 1064 IPR013591 -
Lan8g0769 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 406 457 IPR000408 -
Lan8g0769 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 406 454 IPR000408 -
Lan8g0769 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 520 569 IPR000408 -
Lan8g0769 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 574 621 IPR000408 -
Lan8g0769 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 468 515 IPR000408 -
Lan8g0769 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 351 402 IPR000408 -
Lan8g0769 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 299 347 IPR000408 -
Lan8g0769 1077 MobiDBLite consensus disorder prediction 148 185 - -
Lan8g0769 1077 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 636 698 IPR013083 -
Lan8g0769 1077 Coils Coil 824 865 - -
Lan8g0769 1077 ProSiteProfiles BRX domain profile. 1010 1065 IPR013591 -
Lan8g0769 1077 MobiDBLite consensus disorder prediction 192 208 - -
Lan8g0769 1077 Pfam FYVE zinc finger 625 691 IPR000306 GO:0046872
Lan8g0769 1077 CDD PH_PLC_plant-like 13 125 - -
Lan8g0769 1077 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Lan8g0769 1077 PRINTS Chromosome condensation regulator RCC1 signature 351 367 IPR000408 -
Lan8g0769 1077 PRINTS Chromosome condensation regulator RCC1 signature 392 408 IPR000408 -
Lan8g0769 1077 PRINTS Chromosome condensation regulator RCC1 signature 408 422 IPR000408 -
Lan8g0769 1077 PRINTS Chromosome condensation regulator RCC1 signature 510 528 IPR000408 -
Lan8g0769 1077 PRINTS Chromosome condensation regulator RCC1 signature 568 589 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0769 Lan-Chr8 9842068 9848894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0769 884 1076 Major Intrinsic Protein MIP AT1G31880 29.381 5.12e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0769 - - gmx:100811999 1674.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0769 8 9842068 9848894 Lan20g0080 20 432415 443648 LSH
Lan8g0769 8 9842068 9848894 Lan4g1831 4 26862747 26887772 LSH
Lan7g0998 7 9977418 9985312 Lan8g0769 8 9842068 9848894 PCT
Lan8g0769 8 9842068 9848894 Lan7g0998 7 9977418 9985312 PCT