Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0763 ATGTCGTTCCGCAGTATAGTTCGTGATGTAAGGGATGGATTTGGAAGCTTATCAAGGCGGAGTTTTGAAGTTAGGCTTCCAGGCCATAATAGGGGAAAGTCGCGCAATTCAGTACACGAGTTGCAGGAACAAACTCCAGTTATACAGAATAGTCGATGGGCTAGCCTTCCACCCGAGCTTCTTCGTGATGTTATTAAGAGACTGGAAGCAAGTGAGAGAACCTGGCCTGGCCGTAGGAACGTTGTTGCATGTGCGGCTGTGTGCAAGTCGTGGAGAGATATGTGCAAAGAAATTGTCAATAGTCCCGAATTCTGTGGGAAGATTACTTTCCCGATTTCCCTGAAGCAGCCTGGGTATAGGGATGGACCCATCCAGTGCTTCATCAAGAGAGACAAGTCTAAGATGACATATCACCTCTTCCTTTGCCTTAGTCCTGCCTTGCTTGTTGAAAATGGGAAGTTTCTTCTCTCCGCAAAACGGACAAGACGCACGACTTGCACAGAGTATATCTTATCAATGGATGCAGATAACATATCTAGATCTATTAGCACTTACAATGGAAAACTGAGGTCAAATTTTCTCGGTACCAAATTTATAATGAGTGATACACAGCCTCCCTATAACTATGCTCAGCTTTCTCCACCAGGCCGAAGGAGTAGGTTTTATTCGAAAAAGGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATAGCCCAGGTCACCTATGAGTTGAATGTCCTCGGTACTAGAGGCCCGCGAAGAATGAACTGCACCATGCACTCAATCCCTGCATCATCCCTTGAGCCTGGTGGCACTGTCCCCGGCAAGCCAGAACTCCTTCCCCGCACCCTCGGCGATTCTTTCGGGAGTATATCCTTGTCAAAATCATTCGACACTTCAACCGAGTTTAGCAGCGCTAGGTTCTCGGATATTATCGGAGCTGGCAAAGAAGAGAAAGAGGGAAAGGTGAGACCCCTAGTTCTTAAGAACAAGTCACCTAGATGGCATGAACAACTGCAGTGTTGGTGCCTCAACTTCAGGGGAAGAGTTAACATCGCCTCTGTCAAGAATTTTCAGCTGATCTCTGCAACATCTAGTGCTACTTCGGGAACAGGTTCTACACTATCTCAGCCAACAACACAGTCTGACCATGACAAGATTATTCTTCAGTTTGGCAGGGTCGGCAAGGATATGTTTACAATGGACTATCGGTACCCTCTCTCTGCATTTCAGGCTTTTGCCATATGCTTGACTAGCTTTGACTCAAAACTGGCATGTGAATAA 1284 0.4642 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHNRGKSRNSVHELQEQTPVIQNSRWASLPPELLRDVIKRLEASERTWPGRRNVVACAAVCKSWRDMCKEIVNSPEFCGKITFPISLKQPGYRDGPIQCFIKRDKSKMTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYILSMDADNISRSISTYNGKLRSNFLGTKFIMSDTQPPYNYAQLSPPGRRSRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMHSIPASSLEPGGTVPGKPELLPRTLGDSFGSISLSKSFDTSTEFSSARFSDIIGAGKEEKEGKVRPLVLKNKSPRWHEQLQCWCLNFRGRVNIASVKNFQLISATSSATSGTGSTLSQPTTQSDHDKIILQFGRVGKDMFTMDYRYPLSAFQAFAICLTSFDSKLACE* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0763 427 Gene3D Tubby Protein; Chain A 113 421 IPR025659 -
Lan8g0763 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Lan8g0763 427 Gene3D - 53 98 - -
Lan8g0763 427 SUPERFAMILY Tubby C-terminal domain-like 102 427 IPR025659 -
Lan8g0763 427 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Lan8g0763 427 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Lan8g0763 427 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Lan8g0763 427 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Lan8g0763 427 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Lan8g0763 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Lan8g0763 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Lan8g0763 427 Pfam F-box domain 53 100 IPR001810 GO:0005515
Lan8g0763 427 Pfam Tub family 114 422 IPR000007 -
Lan8g0763 427 PANTHER TUBBY-RELATED 1 427 - -
Lan8g0763 427 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 427 - -
Lan8g0763 427 SUPERFAMILY F-box domain 42 96 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0763 Lan-Chr8 9789763 9793243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0763 1 427 TUB Transcription Factor Family AT1G76900 67.473 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lan8g0763 Tub 9.9e-111 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0763 K19600 - gmx:100817532 741.11