Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0716 ATGTTTATGGTTAATTCCATGGAGAGAAGGAGTTCAGAAAGGTGTTTAGATTCTCAACTATGGCATGCTTGTGCAGGTGCCATGGTTCAAATGCCACCTCTCAACACTAAAGTTTTCTACTTTCCTCAGGGTCATGCAGAACATGCACATGGGAAAGTAGATTTTGGCCAAACCAGGGTTCCACCACTCATCCCTTGCAGGGTCTCAGCTATGAAATTCATGGCAGATCCTGACACAGATGAGGTGTTTGTGAAAATGAGGTTGAACCCTTTGAGAGAAAATGAATTGAATTTTGAAGATGATTGTTTCTTAGGAAAAAATGGAGTGGTTAGTCAAGATAAACCAGCTTCTTTTGCCAAGACATTGACACAATCTGATGCCAACAATGGTGGAGGTTTCTCTGTACCTCGTTATTGTGCTGAGACAATCTTCCCAAGGTTGGACTATTCAGCAGAACCACCAGTTCAGACAATTATTGCCAAGGATGTGCATGGACAGTGCTGGAAATTCAGACATATCTATAGGGGTACCCCTAGGAGGCATCTTTTGACTACTGGTTGGAGCAATTTTGTGAACCAGAAGAAGCTTGTTGCTGGTGATTCCATTGTGTTTCTGAGGGCAGAAAATGGTGATCTTTGTGTTGGAATAAGGAGGGCTAAGAAGGGAGGAATTGGTGGAGGAACTGAGTTATCTTCTTGTTGGAATAACAACCATGCAGCCCCTCCTCTATTTGGTGGTGGTTCTGGTTTCTTGTGTGGGAATGAGAAAAACAACTCTTTGTTGATGAGAAAAGGTAGTCATGAGTTCATAGGAAGAGTGGAAGCTGAATCTGTTGTTGAAGCTGTAACATGTGCTGTTAATGGAAAACCCTTTGAGGTTGTGTACTATCCAAGAGCTAGTACTCCAGAGTTTTGTGTTAAGGTTTCATCTGTGAGGGCTGCAATGCAAATACAATGGTGTTCTGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCTTCTAGGATTAGCTGGTTCATGGGAACTATATCTTCTGTTCAGGTTTCAGATCCCATTCATTGGCCTGATTCTCCTTGGCGTCTTCTTCAGGTAGTGTGGGATGAACCAGACCTACTTCAAAATGTTAGGTGTGTAAACCCTTGGTTGGTTGAACTAGTCACAAACATGCCCACCTTCCATCTCTCTCCATTCTCACCACCAAGAAAGAAACAAAAGCTTCTACAGGACCCAGAGTTTCACCTCAACAACCAACTTCCAATGCCATCATTCTCTAGCAATCTTCTCAATCATCATTCTAACTCTCTACATAACATTCAAGACCATAGTTCTTCAAGCATACAGGGAGCCAGGCATGCTCAATTTGGACTAACTCCATCAGTTTTTCCCTTAAACAACAATAAGCAGCTACAACAAGAGATGCATCTTTTTGGCTTCCAAAGGCTTAACCATGCAGAAAAACCTGTTAGGCCACCTTGTGGAATCTATAAAAGCAGTACTAAGAACAATGTTGACATATCTTGCTTGTTGACAATAGGAAATCCTGGCCAGAGTTTTAAGGAATCAGATGAAGCAAAAGCACCACATATCTTGTTATTTGGAAAACTCATTCATACTGAGCAGAAGAGTTCAAACAGTAACTCTGCTGGTACAAATGGGAATAGTGTATCTGATAGTACTTCACAGAAGACATCAAATGCTTCTGATGGCCATGGTTCTTCTGCTTTGCATCAAACTAGTCCAATTGAGAACTCTTCTAATGAAGGGTCTCCCTGGTACAAAGATCAGCACAAAACTGATCTTGCAACAGAAAAAGTTAACATATTATGTATGGCTTTATAA 1842 0.4137 MFMVNSMERRSSERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFGQTRVPPLIPCRVSAMKFMADPDTDEVFVKMRLNPLRENELNFEDDCFLGKNGVVSQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDVHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKKGGIGGGTELSSCWNNNHAAPPLFGGGSGFLCGNEKNNSLLMRKGSHEFIGRVEAESVVEAVTCAVNGKPFEVVYYPRASTPEFCVKVSSVRAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVSDPIHWPDSPWRLLQVVWDEPDLLQNVRCVNPWLVELVTNMPTFHLSPFSPPRKKQKLLQDPEFHLNNQLPMPSFSSNLLNHHSNSLHNIQDHSSSSIQGARHAQFGLTPSVFPLNNNKQLQQEMHLFGFQRLNHAEKPVRPPCGIYKSSTKNNVDISCLLTIGNPGQSFKESDEAKAPHILLFGKLIHTEQKSSNSNSAGTNGNSVSDSTSQKTSNASDGHGSSALHQTSPIENSSNEGSPWYKDQHKTDLATEKVNILCMAL* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0716 613 CDD B3_DNA 117 218 IPR003340 GO:0003677
Lan8g0716 613 SUPERFAMILY DNA-binding pseudobarrel domain 108 218 IPR015300 -
Lan8g0716 613 SMART B3_2 118 220 IPR003340 GO:0003677
Lan8g0716 613 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Lan8g0716 613 MobiDBLite consensus disorder prediction 542 594 - -
Lan8g0716 613 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Lan8g0716 613 Gene3D - 116 220 IPR015300 -
Lan8g0716 613 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 583 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan8g0716 613 PANTHER AUXIN RESPONSE FACTOR 16 9 583 - -
Lan8g0716 613 MobiDBLite consensus disorder prediction 542 592 - -
Lan8g0716 613 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan8g0716 613 Gene3D - 318 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0716 Lan-Chr8 9260380 9263695 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0716 3 597 B3 DNA Binding Superfamily AT4G30080 55.556 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan8g0716 B3 1.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0716 - - gmx:100803053 930.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0716 8 9260380 9263695 Lan20g0151 20 949518 951810 LSH