Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0715 ATGTTTATGGTTAATTCCATGGAGAGAAGGAGTTCAGAAAGGTGTTTAGATTCTCAACTATGGCATGCTTGTGCAGGTGCCATGGTTCAAATGCCACCTCTCAACACTAAAGTTTTCTACTTTCCTCAGGGTCATGCAGAACATGCACATGGGAAAGTAGATTTTGGCCAAACCAGGGTTCCACCACTCATCCCTTGCAGGGTCTCAGCTATGAAATTCATGGCAGATCCTGACACAGATGAGGTGTTTGTGAAAATGAGGTTGAACCCTTTGAGAGAAAATGAATTGAATTTTGAAGATGATTGTTTCTTAGGAAAAAATGGAGTGGTTAGTCAAGATAAACCAGCTTCTTTTGCCAAGACATTGACACAATCTGATGCCAACAATGGTGGAGGTTTCTCTGTACCTCGTTATTGTGCTGAGACAATCTTCCCAAGGTTGGACTATTCAGCAGAACCACCAGTTCAGACAATTATTGCCAAGGATGTGCATGGACAGTGCTGGAAATTCAGACATATCTATAGGGGTACCCCTAGGAGGCATCTTTTGACTACTGGTTGGAGCAATTTTGTGAACCAGAAGAAGCTTGTTGCTGGTGATTCCATTGTGTTTCTGAGGGCAGAAAATGGTGATCTTTGTGTTGGAATAAGGAGGGCTAAGAAGGGAGGAATTGGTGGAGGAACTGAGTTATCTTCTTGTTGGAATAACAACCATGCAGCCCCTCCTCTATTTGGTGGTGGTTCTGGTTTCTTGTGTGGGAATGAGAAAAACAACTCTTTGTTGATGAGAAAAGGTAGTCATGAGTTCATAGGAAGAGTGGAAGCTGAATCTGTTGTTGAAGCTGTAACATGTGCTGTTAATGGAAAACCCTTTGAGGTTGTGTACTATCCAAGAGCTAGTACTCCAGAGTTTTGTGTTAAGGTTTCATCTGTGAGGGCTGCAATGCAAATACAATGGTGTTCTGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCTTCTAGGATTAGCTGGTTCATGGGAACTATATCTTCTGTTCAGGTTTCAGATCCCATTCATTGGCCTGATTCTCCTTGGCGTCTTCTTCAGGTAGTGTGGGATGAACCAGACCTACTTCAAAATGTTAGGATGTTCTGA 1140 0.4254 MFMVNSMERRSSERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFGQTRVPPLIPCRVSAMKFMADPDTDEVFVKMRLNPLRENELNFEDDCFLGKNGVVSQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDVHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKKGGIGGGTELSSCWNNNHAAPPLFGGGSGFLCGNEKNNSLLMRKGSHEFIGRVEAESVVEAVTCAVNGKPFEVVYYPRASTPEFCVKVSSVRAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVSDPIHWPDSPWRLLQVVWDEPDLLQNVRMF* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0715 379 CDD B3_DNA 117 218 IPR003340 GO:0003677
Lan8g0715 379 SMART B3_2 118 220 IPR003340 GO:0003677
Lan8g0715 379 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 377 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan8g0715 379 SUPERFAMILY DNA-binding pseudobarrel domain 108 218 IPR015300 -
Lan8g0715 379 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Lan8g0715 379 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan8g0715 379 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Lan8g0715 379 Gene3D - 116 220 IPR015300 -
Lan8g0715 379 PANTHER AUXIN RESPONSE FACTOR 16 9 377 - -
Lan8g0715 379 Gene3D - 318 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0715 Lan-Chr8 9258094 9260355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0715 3 377 B3 DNA Binding Superfamily AT4G30080 68.586 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan8g0715 B3 7.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0715 - - lang:109353882 778.089