Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0712 ATGGGATTGCTCAGCAGTTTATTGGGGATTATTGGTTTTGTTATTGGAATCCCTCTTGGCCTATTGGTTGGCTTCTTTGTATTTGTTTATCCTCAAGATACCAAACAAGTCAAGGACCCTGTTGTTAGGCCAATTAGTGAATTAGGCCCAAAAGCTTTGGAAGAACTTCTACCTGAGATTCCTCTGTGGGTGAAGACACCTGATTATGAACGAGTTGATTGGTTAAACAAGTTTTTGCTGGATATGTGGCCTTTCTTAGACAAGGCAATTTGTGGGATGATTAGACTCAATGCAAAACCAATATTTGCTGAATACATTGGCAAGTATCATATTAAAGGAATCGAGTTTGATAAGTTAAGCCTCGGAACTCTTCCTCCTACTCTCTGTGGTATTAAAGTTTTGGAAACAAATGAAAAGGAATTGGTCATGGAACAAGTGATCAAATGGGCTGGCAATCCAAACATAGTGTTGGATTTGCACGTGTCTTCTTTGAAGATCTCAGTTCAGTTGGTGGACTTACAAGTATTTGTGACATTGCGGACAACTTTAAGACCTTTAGTGCCTACGATACCTTGTTTTGCGAAGATTGTGGTATCTTTGATGGAGAAGCCTCACGTGGATTTCGGGATGAAAATATCTGGAGGAGACATCATGGCTATACCCGGTCTTTATGGATTTGTTCAGGAAACAATAAAAAAGCAAGTTGCAAGTCTCTATCTCTGGCCTCAAACCTTGGAAATTCCTATCCTCGATGAATCAACGGTGGCTATAAAGAAGCCCGTGGGAATATTACATGTGAATGTAGTTCGGGCACATAAGCTTTTGAAGAAGGACTTGTTGGGAACTTCTGATCCTTACGTCAAACTAACTCTAACTGGAGACAAACTTGCAGCAAAGAAAACCACTATCAAGATGAGGAATTTGAACCCGGAGTGGAATGAGAAGTTCAAGCTTGTCGTGAAGGACCCTAATTCTCAAGTTCTCCAATTACAAGTCTATGACTGGGACAAGGTTGGTGCGCATGATAGGCTGGGAATGCAATTAGTCCCTCTTAAGGTTCTTAAACCCTACGAGAATAAAGAATTTACGCTCGATTTACTTAAGGACACTAATATCAATGAAGTTCCAATAAAGAAGAATAGAGGGCAGATTGTAGTGGACTTGACTTTTGTTCCTTTCAAAGAAGATAGCATGAAGTTTGGTGGAAATTCGAGGACATATAGCAGAAAGGAAAGCGGAAAGGATGTCGTATCCGACGATGAGGTCCAAGAAGGAGCAGGTTTACTTTCACTTGTGATACAGGAAGCTGAAGAGGTTGAAGGGGAACATCACAACAACCCATATGCAGTGCTTACCTTTAGAGGTGAAAAGAAAAAGACTAAGATAATGAGGAAAACTCGTCACCCACGTTGGAATGAAGAATTCCAATTCATGCTTGAGGAGCCTCCTCTACATGAGAAAATACACATTCAGGTTTTCAGCAAGAGGAAAAAGTTTAGTTTTTTCTCAAAGGAATCATTGGGGTATGTAGAGATTAACCTGAATGATGTGGTGCACAATGGTCGCATTAATAATAAATATCATCTTATAGATTCAAAGAATGGAGTGATACAAGTTGAGATAAGATGGACAACAGCTTGA 1641 0.3998 MGLLSSLLGIIGFVIGIPLGLLVGFFVFVYPQDTKQVKDPVVRPISELGPKALEELLPEIPLWVKTPDYERVDWLNKFLLDMWPFLDKAICGMIRLNAKPIFAEYIGKYHIKGIEFDKLSLGTLPPTLCGIKVLETNEKELVMEQVIKWAGNPNIVLDLHVSSLKISVQLVDLQVFVTLRTTLRPLVPTIPCFAKIVVSLMEKPHVDFGMKISGGDIMAIPGLYGFVQETIKKQVASLYLWPQTLEIPILDESTVAIKKPVGILHVNVVRAHKLLKKDLLGTSDPYVKLTLTGDKLAAKKTTIKMRNLNPEWNEKFKLVVKDPNSQVLQLQVYDWDKVGAHDRLGMQLVPLKVLKPYENKEFTLDLLKDTNINEVPIKKNRGQIVVDLTFVPFKEDSMKFGGNSRTYSRKESGKDVVSDDEVQEGAGLLSLVIQEAEEVEGEHHNNPYAVLTFRGEKKKTKIMRKTRHPRWNEEFQFMLEEPPLHEKIHIQVFSKRKKFSFFSKESLGYVEINLNDVVHNGRINNKYHLIDSKNGVIQVEIRWTTA* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0712 546 SMART C2_3c 428 526 IPR000008 -
Lan8g0712 546 SMART C2_3c 263 363 IPR000008 -
Lan8g0712 546 Gene3D C2 domain 257 425 IPR035892 -
Lan8g0712 546 ProSiteProfiles C2 domain profile. 411 527 IPR000008 -
Lan8g0712 546 Gene3D C2 domain 428 545 IPR035892 -
Lan8g0712 546 PRINTS C2 domain signature 279 291 IPR000008 -
Lan8g0712 546 PRINTS C2 domain signature 306 319 IPR000008 -
Lan8g0712 546 PRINTS C2 domain signature 328 336 IPR000008 -
Lan8g0712 546 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 249 IPR039010 -
Lan8g0712 546 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 68 250 IPR031468 GO:0008289
Lan8g0712 546 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 427 545 IPR035892 -
Lan8g0712 546 Pfam C2 domain 428 529 IPR000008 -
Lan8g0712 546 Pfam C2 domain 262 360 IPR000008 -
Lan8g0712 546 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 545 IPR045050 GO:0008289
Lan8g0712 546 ProSiteProfiles C2 domain profile. 241 364 IPR000008 -
Lan8g0712 546 PANTHER SYNAPTOTAGMIN-3 1 545 - -
Lan8g0712 546 CDD C2 264 366 - -
Lan8g0712 546 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 259 392 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0712 Lan-Chr8 9221530 9226279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0712 261 345 C2H2 Transcription Factor Family AT4G05330 40.000 3.25e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0712 - - gmx:100813029 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0712 8 9221530 9226279 Lan20g0155 20 980314 984543 LSH