Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0698 ATGTTCCCTGCACCTATGTCCAATTCCACTCCTTTATCAGAAGAAGCCAGTGTACTCTCTTCTGATGCAAGAATTCATCAGGACTTAGTCTCAACCATTTCTCCTCAACAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGTAACCCAGACCCAGATGCAGAAGTAATTGCCTTATCTCCAAAGACTCTTCTAGCTACAAATAGGTTTGTGTGTGAGATCTGCAAAAAGGGTTTCCAGAGGGATCAGAATCTTCAGCTTCATAGGAGAGGCCATAACTTGCCTTGGAAGCTGAAACAAAGGAACAACAAAGAAGTGAAAAAGAGAGCCTATGTTTGCCCTGAGCCTTCATGTGTTCACCACAACCCATCAAGGGCTCTTGGAGATCTTACAGGTATTAAGAAACACTATTGCAGAAAACATGGAGAGAAGAAGTGGAAGTGTGACAAGTGCTCTAAGATCTATGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACTTGTGGTACTAGAGAGTATAGATGTGATTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGAGCATTTTGTGATGCATTGGCTGAAGAAAGTGCAAGAATCTCAGCAAATCAAATAGCCAACAACTCCACAAACCCATTATCCCAATCTCTCTTCCTTTTCCCAACAACCCAACAAAACAACTTCCAAAACCATTTCACCACCACCCTCAATCCTAGCTGGGACCCTTCACACCAAAACCCTAACCCTAGCAACTTTGCTACTACCCTCCACAACAGTATCAAACCTGAAGCTCAAACCTTTCATATCCCCAACAACAATAACAACCCCTCATTTCTTCACCACCCCAAGAACATCATAACATCTTCACCTTTCAGAAACCTCCAAGTTTGTACACAAAACCCTTCAAACTCTTGTACATCAGCATATCTCTCAGCCACTGCGCTGCTCCAGAAGGCGGCGACCGTCGGTGCCGCTGCCATAACAGGCCCTAATGCTACCGTTAGCATTGGCCAACAACAACACGTGACTCATTTTGGAACAGTGACGACTCAGCTCAACAATTCTGTGGTACCTGATCATAATCACTACAACATGAAGAGGCTAAACAAGAACGAGACAAGGGACTTTCTGGGTCTGACTAACGGAGGAAATAATGTTGACGTTAGCATGAACATGAAGGATATGTTAACGTTCACGGGAAGTGTAGATTACCAGAACCAACCTTATGAGAACCATCACCATCAGCACTCACAGTTCAAGTACCAACAGCAAGGTTTTGGATTCGTTGGGACAACCACTGCCCCTGAGTCATGGGGGAATTGTTGA 1335 0.4404 MFPAPMSNSTPLSEEASVLSSDARIHQDLVSTISPQQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARISANQIANNSTNPLSQSLFLFPTTQQNNFQNHFTTTLNPSWDPSHQNPNPSNFATTLHNSIKPEAQTFHIPNNNNNPSFLHHPKNIITSSPFRNLQVCTQNPSNSCTSAYLSATALLQKAATVGAAAITGPNATVSIGQQQHVTHFGTVTTQLNNSVVPDHNHYNMKRLNKNETRDFLGLTNGGNNVDVSMNMKDMLTFTGSVDYQNQPYENHHHQHSQFKYQQQGFGFVGTTTAPESWGNC* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0698 444 SMART c2h2final6 145 165 IPR013087 -
Lan8g0698 444 SMART c2h2final6 110 140 IPR013087 -
Lan8g0698 444 SMART c2h2final6 69 91 IPR013087 -
Lan8g0698 444 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Lan8g0698 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Lan8g0698 444 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 12 423 - -
Lan8g0698 444 SUPERFAMILY beta-beta-alpha zinc fingers 68 165 IPR036236 -
Lan8g0698 444 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 423 - -
Lan8g0698 444 Gene3D Classic Zinc Finger 65 92 - -
Lan8g0698 444 Gene3D Classic Zinc Finger 103 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0698 Lan-Chr8 9092719 9096384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0698 30 429 IDZ Gene Family AT4G02670 50.605 2.27e-123 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan8g0698 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0698 K25870 - gmx:100780056 617.076