Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0684 ATGGCTGCTGCTGCTGCACTAGGTAGTAGTAGTAGGCTTCAAAGCATGTTGCAGGATGCAGTGCAATCTGTTCAGTGGACTTATAGCCTCTTCTGGCAACTTTGTCCACAACGAGCGATTCTGGTATGGGGAGATGGGTACTATAACGGGGCAATAAAGACCAGAAAGACAGTGCAACCAATGGAGGTTAGTGCAGAAGAGGCAACTCTTCAAAGAAGCCAGCAACTTAGAGAACTCTATGAAACTTTGTCTGCCGGAGAGATAAACCAACCTACTCGCCGCCCTTGTGCTGCCTTGTCGCCGGAGGACTTAACTGAATCTGAGTGGTTCTATTTGATGTGTGTCTCCTTCTCCTTTCCCCCTGGTGTCGGGTTGCCGGGAAAGGCTTATGCCAGGAGGCAGCATTTATGGCTTGCTGGTGCTGATGAGGTTGACAGCAAAACATTTTCAAGAGCTATTCTAGCCAAGAGCGCTCATATACAGACAGTGGTGTGCATTCCTCTATCAGACGGCGTCGTTGAACTTGGTACAACGGATAAGGTTCAAGAAGACTTTAATTTCATTCAACACATCAATACCTTTTTCACAGACATCCACCACCACCACCACCATCCTCCGCCGCCAAAGCCCGCCCTATCAGAGCACTCAACCTCCAACCCCACTTCCTCATCCGATCACATCACCGCCGTCATGTACACCGCTGCAGATATACCAGCCACCAATGTTGCCAAAGAAGATGACATGGATGAAGATGAGGAAGAAGAGGAGGAAGAAGAAGATGAAGATAACGATGAAGATGAAACAGGAAGTAACGTTCGACAAACATTGGTACGTGAAAGTTTGGAAATGGTGATGCAGGTGGAGATGGCGGAGGAGTCACCGAATAACGGTTCGAATAACTTGGACTCGGATTTTCATTTGTTAGCGGTGACTCAGCAACCCGGGTACCCACCAAGTGTATCCGATTCGTACCCGGTTGGACCAAACCAGAGATGGGTCCCAACCCAAGATCCGATCGGAACATTTCAAGTTCAACTACCGGCTTCAGTAATTCCACTTTCTCCTCTAGAAGACATGGCACAAGAAGACACTCACTACTCTCAAACAGTATCCAGCATCATCCAAAATCAGTATACTCGTTGGGCTGAATCACCCTCCATTGGTTACTCCACCGTGCAATCAGCTTTCACCAAGTGGAACATCTGTTCGAACCACCACCTCCCCACGGCGGTAATGAACGGCATCTCTCAGCGGCTTCTCAAGTACATTCTCTTCACTGTCCCATGCTTACACGCTAAGAACCACGTAGAGAAATATTCCCCTCAAACCCTAGACGCCGCTACAGCTTCTGCAGGTGACTCTGTGGCACTTCTACGCAGCAAAGGGACACCGCAAGACGAGCTGAGCGCCAACCATGTGCTGGCGGAACGCCGCCGCCGAGAGAAGTTGAACGAGAGGTTCATCATTCTAAGGTCACTAGTGCCATTTGTGACCAAAATGGATAAGGCTTCTATACTAGGTGACACCATTGAATATGTGAAACAGCTTCTCCGGAAGATCCAAGATCTAGAAGCGCGTAACCGACAAATATTGGAGACAGAACAACAACGTTGGAAAAACACGGAGGTTATAGAGGTGCAAAGAACGAGTACTAGCAGCTCCACGAAGGAACAACAGAGAAGTGGGGTGACAGTAATGGTGGGGCCAGAGAAGAGAAAGTTGAGGATCATAGAGAAGGAGGTTGAGGAAGCTTTAACGTCAGTGCAAGTTTCAATCATAGAGAGTGATGCACTTTTGGAATTGGAGTGTCCTCATAGAGAAGGATTGCTTCTTGATGTTATGCAGATTCTGAGGGAGTTGAGAATAGAAGTGATAGGAGTGCAATCATGTTTGAATAATGGTGTTTTTGTTGCAGAGTTAAGGGCTAAGGTGAAGGAAAATATGAACGGGAAGAAGATTAGTATTGTTGAAGTGAAGAGAGCACTTGACCAAATTATACCACACACTACTCACTAG 2016 0.4737 MAAAAALGSSSRLQSMLQDAVQSVQWTYSLFWQLCPQRAILVWGDGYYNGAIKTRKTVQPMEVSAEEATLQRSQQLRELYETLSAGEINQPTRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHLWLAGADEVDSKTFSRAILAKSAHIQTVVCIPLSDGVVELGTTDKVQEDFNFIQHINTFFTDIHHHHHHPPPPKPALSEHSTSNPTSSSDHITAVMYTAADIPATNVAKEDDMDEDEEEEEEEEDEDNDEDETGSNVRQTLVRESLEMVMQVEMAEESPNNGSNNLDSDFHLLAVTQQPGYPPSVSDSYPVGPNQRWVPTQDPIGTFQVQLPASVIPLSPLEDMAQEDTHYSQTVSSIIQNQYTRWAESPSIGYSTVQSAFTKWNICSNHHLPTAVMNGISQRLLKYILFTVPCLHAKNHVEKYSPQTLDAATASAGDSVALLRSKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLLRKIQDLEARNRQILETEQQRWKNTEVIEVQRTSTSSSTKEQQRSGVTVMVGPEKRKLRIIEKEVEEALTSVQVSIIESDALLELECPHREGLLLDVMQILRELRIEVIGVQSCLNNGVFVAELRAKVKENMNGKKISIVEVKRALDQIIPHTTH* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0684 671 Gene3D - 462 533 IPR036638 GO:0046983
Lan8g0684 671 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 13 195 IPR025610 -
Lan8g0684 671 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 469 532 IPR036638 GO:0046983
Lan8g0684 671 SMART finulus 473 522 IPR011598 GO:0046983
Lan8g0684 671 PANTHER TRANSCRIPTION FACTOR TT8 12 668 - -
Lan8g0684 671 Pfam Helix-loop-helix DNA-binding domain 470 516 IPR011598 GO:0046983
Lan8g0684 671 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 467 516 IPR011598 GO:0046983
Lan8g0684 671 Coils Coil 513 533 - -
Lan8g0684 671 MobiDBLite consensus disorder prediction 198 273 - -
Lan8g0684 671 PANTHER TRANSCRIPTION FACTOR TT8 12 668 - -
Lan8g0684 671 MobiDBLite consensus disorder prediction 245 267 - -
Lan8g0684 671 Coils Coil 241 261 - -
Lan8g0684 671 MobiDBLite consensus disorder prediction 214 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0684 Lan-Chr8 8996135 9007776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0684 358 671 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 36.624 1.18e-48 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan8g0684 bHLH-MYC_N 2.3e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0684 - - lang:109346631 882.863