Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0648 ATGAGTAGACATTCCAGCAAAACTATCTACGTTGGGAATCTACCAGGTGATATTCGTGAAAGAGAAGTCGAAGATTTGTTTTTTAAGTATGGACACATAGCTCACATTGACCTAAAGGTTCCACCAAGGCCCCCGGGTTATGCATTTGTGGAGTTTGAAGATCCTCAAGATGCTGAAGATGCAATTCGTGGGCGTGATGGCTATGACTTTGATGGGCACCGATTACGGGTAGAGCTTGCACATGGTGGGCGTGGTAATACATCTTCAAGAGACCGATATGATAGTCGCAGCAATGGACGGGGTGGAGGTGGACGTGGGGGTGGGATATCTAAGCGCTCTGATTATCGTGTTCTCGTCACAGGGTTGCCCTCTTCAGCTTCCTGGCAGGACCTTAAAGATCACATGCGAAAGGCAGGGGATGTTTGCTTCTCCCAAGTTTTTCGTGATGGAAGAGGTACAACTGGTATTGTGGATTACACAAACTATGATGACATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTTAAGAATGCATTTTCCAGGGGTTATGTTCATGTGAGAGAATATGATTCAAGGAAGGACTCTAGAAGTCCTAGTCGTGATCGATCTTATTCCAGAGGAAGAAGCTATAGTCGCAGTCGTAGCCGTAGTCACAGTCCGGGCGGCAGCCGAAGTAAATCTCCAAAGGGCAAATCTTCACACAGTAAATCTCCAAAGGGCAAATCTTCGCGCAGTAAATCTCCAAAGGGCAAATCTTCACGCAGTAAATCTCCAAAGGGCAAATCTTCACGGCTTTCACCAGCTAAATCTCCTTTGCGATCTGCTTCTCATTCTCGCTCAAGATCAAGGTCCCGCTCTTTATCAAGATCTCTATCAAGATCAAGGTCTCCTTTGCCGTTGCGTAATAAGAGCCCAAAAGAACGCAGTGCTAGCAGAAGCCCAAGAAAGAGTCCAAAAAGACACAGTGCAAGCAGAAGCCCAAGTAACAGCCCGAAAAGACGCAGTGCTAGCAGAAGCCCAAGTAAGGGTGAGGTGTGA 1044 0.4646 MSRHSSKTIYVGNLPGDIREREVEDLFFKYGHIAHIDLKVPPRPPGYAFVEFEDPQDAEDAIRGRDGYDFDGHRLRVELAHGGRGNTSSRDRYDSRSNGRGGGGRGGGISKRSDYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFRDGRGTTGIVDYTNYDDMKYAIKKLDDSEFKNAFSRGYVHVREYDSRKDSRSPSRDRSYSRGRSYSRSRSRSHSPGGSRSKSPKGKSSHSKSPKGKSSRSKSPKGKSSRSKSPKGKSSRLSPAKSPLRSASHSRSRSRSRSLSRSLSRSRSPLPLRNKSPKERSASRSPRKSPKRHSASRSPSNSPKRRSASRSPSKGEV* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0648 347 MobiDBLite consensus disorder prediction 261 277 - -
Lan8g0648 347 SMART rrm1_1 8 78 IPR000504 GO:0003723
Lan8g0648 347 SMART rrm1_1 116 187 IPR000504 GO:0003723
Lan8g0648 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Lan8g0648 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 193 IPR000504 GO:0003723
Lan8g0648 347 MobiDBLite consensus disorder prediction 231 260 - -
Lan8g0648 347 CDD RRM1_SF2_plant_like 8 79 - -
Lan8g0648 347 MobiDBLite consensus disorder prediction 79 110 - -
Lan8g0648 347 MobiDBLite consensus disorder prediction 191 210 - -
Lan8g0648 347 PANTHER OS07G0673500 PROTEIN 2 286 - -
Lan8g0648 347 Gene3D - 2 112 IPR012677 -
Lan8g0648 347 MobiDBLite consensus disorder prediction 216 230 - -
Lan8g0648 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Lan8g0648 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 179 IPR000504 GO:0003723
Lan8g0648 347 Gene3D - 114 191 IPR012677 -
Lan8g0648 347 MobiDBLite consensus disorder prediction 191 347 - -
Lan8g0648 347 MobiDBLite consensus disorder prediction 79 98 - -
Lan8g0648 347 CDD RRM2_SF2_plant_like 115 190 - -
Lan8g0648 347 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 286 - -
Lan8g0648 347 SUPERFAMILY RNA-binding domain, RBD 6 180 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0648 Lan-Chr8 8713287 8717611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0648 3 177 Eukaryotic Initiation Factors Gene Family AT4G34110 25.000 6.41e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0648 K12890 - gmx:100796900 335.88