Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0647 ATGGCGGCATCATCTTCATCAGTATCACTCTTTGGATTTAGAGAAACGGACCAGAATCAGAATCAGATGAATCAACAGCATTCATCTTCAGCAACTCCACCTGCACCACCTCAGAAGAAAAAGAGAAACCAACCTGGAACACCAAATCCTGATGCTGAGGTAATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTACCTTGGAAGCTTAAACAGAAGACTACAAAAGATGCAAGGAGAAAGGTTTATCTGTGCCCTGAACCCACTTGCATTCACCATGATCCTTCAAGGGCTCTTGGTGACCTCACTGGGATTAAGAAGCACTATTATCGCAAGCATGGTGAGAAAAAGTGGAAGTGTGATAAGTGCTCTAAGAAGTATGCTGTTCAATCTGATTGGAAAGCCCATTCTAAGATTTGTGGCACCAGAGAATATAGATGTGATTGTGGCACTATCTTCTCCAGAAGGGACAGTTTCATAACCCACAGGGCCTTCTGTGATGCACTAGCTCAAGAGAGTGAAAGGCAGCCACCAAATCTGAGCAGTGCCAACCATCTCTATGGAACTAATCATAGCAACATGGCCTTAGCCTTATCTCAAGTGGCTCCACAAATGTCCAACATTCAAGACCAGATCAATAACAACCAATCTACTGACCTATTGCACCATGGAGATAATATCGGTCCGATCGAACAGTTTAACCATCATTCATCGTTGCATGACGGTTCATCATCTTTTAAGCCTTTGCATCAAACTATGCAGCATTCTCCACCTTCATTCTTCATGGATGCTGATAATTTAAACCAAAACTACAACCACCCTGACCAGTCTAGACAACAACAACAACAACAAGGGTTGGTGCAACAAAATAAAGTACCATTTCAGGGACTAATGCATTTGTCTCATGATGGTTTTAACAATCATCACAACAATTCTCCATCACCTGATGCTGGATCACACAACCTCTTCAACCATCTCTTCCTTTCAACTAACAACAGCAACAACTCCTTCTCTGAACTTTTCAACAGTGCCAATGGAAGCATTGGAGGAGGCAATGAAGCAACCAACTTCTTCACTACAGGTAATTCTACAATGGGTGGTCATCATCATCAACAAATAATAACTTCAAGTGCACCCTCTCTATTCAGCACATCTCTCCAAAGCAACAATAGTGTTGGCAATACTCATCATATGTCAGCAACTGCACTGCTACAGAAAGTTGCTCAAATGAGTGCAACTTCCAGCAACAGCACCACCTCACTTCTAAAAAACTTCGGAAGCATCACTTCCTCTAGCAGCATATTCGGTGGAATTGAAAACAACAACAGTAACATGCAAGACCTAATGAACACGTTTGCAGCTAGTGGAAACACTTCAATATTGGAAGATGGTGGTTCATTAGGGCTTACTGGGTTTGAACCATATGATGATAAATCAAACAGAAGGAAAGAACCAAGAGTGCATGGAGTTAACATTGGTGGCTCGGATGATAGACTCACTCGTGATTTTCTTGGTGTTGGTGAAATAGTGAGAAGCATGAATGGTGGAAGAGAACAACATGGACATGGTGGAAGTGGAGGGAATTTGCACTGA 1671 0.4237 MAASSSSVSLFGFRETDQNQNQMNQQHSSSATPPAPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKDARRKVYLCPEPTCIHHDPSRALGDLTGIKKHYYRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYRCDCGTIFSRRDSFITHRAFCDALAQESERQPPNLSSANHLYGTNHSNMALALSQVAPQMSNIQDQINNNQSTDLLHHGDNIGPIEQFNHHSSLHDGSSSFKPLHQTMQHSPPSFFMDADNLNQNYNHPDQSRQQQQQQGLVQQNKVPFQGLMHLSHDGFNNHHNNSPSPDAGSHNLFNHLFLSTNNSNNSFSELFNSANGSIGGGNEATNFFTTGNSTMGGHHHQQIITSSAPSLFSTSLQSNNSVGNTHHMSATALLQKVAQMSATSSNSTTSLLKNFGSITSSSSIFGGIENNNSNMQDLMNTFAASGNTSILEDGGSLGLTGFEPYDDKSNRRKEPRVHGVNIGGSDDRLTRDFLGVGEIVRSMNGGREQHGHGGSGGNLH* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0647 556 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Lan8g0647 556 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Lan8g0647 556 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 547 - -
Lan8g0647 556 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Lan8g0647 556 SUPERFAMILY beta-beta-alpha zinc fingers 67 164 IPR036236 -
Lan8g0647 556 MobiDBLite consensus disorder prediction 1 53 - -
Lan8g0647 556 MobiDBLite consensus disorder prediction 1 37 - -
Lan8g0647 556 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 547 - -
Lan8g0647 556 SMART c2h2final6 68 90 IPR013087 -
Lan8g0647 556 SMART c2h2final6 144 164 IPR013087 -
Lan8g0647 556 SMART c2h2final6 109 139 IPR013087 -
Lan8g0647 556 Gene3D Classic Zinc Finger 122 201 - -
Lan8g0647 556 Gene3D Classic Zinc Finger 47 115 - -
Lan8g0647 556 MobiDBLite consensus disorder prediction 279 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0647 Lan-Chr8 8704770 8711113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0647 38 541 IDZ Gene Family AT2G02070 48.457 5.46e-135 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan8g0647 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0647 K25870 - gmx:100799389 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0647 8 8704770 8711113 Lan20g0238 20 1591019 1597238 LSH
Lan8g0647 8 8704770 8711113 Lan4g1652 4 25396371 25402690 LSH