Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0625 ATGGAGAAAGACAACAACAATAACCGCAACGAAGAACAACAACATTCGAATTTGAATATTCTAGAGGAACACATGATTGAACGTGACGATGCTATAGGAACTGGATCTGCTTCATCCCCTCGTAGAACACCTTTCACTAATCTCATCCAAGTCGATGCTGACCTAGCCCTTGCCCGAACCCTTCAGGAGCAGGAGAGGGCATATATGATGCTTAGAATGAATAATGATGGAAGTGACCATGGAAGTTGGGAAGGTGGAAGCTATTTGCATGAAGGTGACTCTAATGATCTTCATGATGCCATTGACGAGGATGAGGATGATGATGAAGATGATGATATCGAGGATGTGGAGGGATACGAGGATGAAGATGTGTTTGATGTCCATGCTCATGATAGCCCAAGGGTTGAATTTGACCCTGCTGTATTTACAAGTGATGAAGCTTATGCAAGAGCATTACAAGAGGCCGAAGAGAGGGAAATGGCTGCTAGACTCTTCGCTCTTGCTGGAGAGGAGCATGGTGCTAATTCTCAGGATGCATGGGAGGATATTGATCCAGATGAACTTTCATATGAGGAACTACTGGCCTTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTATCGCCAATTTGCCTTCGGTTAACTACAAGACCGGTGGTGATCAACATCGAAGCAACGATTCGTGTGTCATTTGCCGTGTGGACTACGAGGATGGTGAGTCCTTGACAGTTCTTAACTGCAAACATCTGTACCATCCTGAGTGCATTAACAACTGGTTGAAGATAAACAAGGTATGCCCAGTTTGCAGTACTGAGGTGTCTACTCCTGGAAGCAGCTTGTAG 855 0.4503 MEKDNNNNRNEEQQHSNLNILEEHMIERDDAIGTGSASSPRRTPFTNLIQVDADLALARTLQEQERAYMMLRMNNDGSDHGSWEGGSYLHEGDSNDLHDAIDEDEDDDEDDDIEDVEGYEDEDVFDVHAHDSPRVEFDPAVFTSDEAYARALQEAEEREMAARLFALAGEEHGANSQDAWEDIDPDELSYEELLALGEVVGTESRGLSTDTIANLPSVNYKTGGDQHRSNDSCVICRVDYEDGESLTVLNCKHLYHPECINNWLKINKVCPVCSTEVSTPGSSL* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0625 284 CDD RING-H2_PA-TM-RING 233 273 - -
Lan8g0625 284 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 5 281 - -
Lan8g0625 284 MobiDBLite consensus disorder prediction 82 113 - -
Lan8g0625 284 MobiDBLite consensus disorder prediction 98 113 - -
Lan8g0625 284 Pfam Ring finger domain 231 273 IPR001841 -
Lan8g0625 284 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 5 281 IPR043312 -
Lan8g0625 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 280 IPR013083 -
Lan8g0625 284 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Lan8g0625 284 SUPERFAMILY RING/U-box 226 280 - -
Lan8g0625 284 SMART ring_2 233 273 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0625 Lan-Chr8 8529342 8532920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0625 136 277 C3H Transcription Factor Family AT3G63530 45.270 2.83e-36 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0625 K19045 - gmx:100787418 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0625 8 8529342 8532920 Lan4g1625 4 25141256 25148865 LSH