Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0622 ATGGACAATTATATATGTCTAAGTTCATCGGATGATGACCTAGAGGAGATAGAAGATCCAAGGAGGTCTCTCCCACAATGGGCTGCTCCTGAAAGGAATTCAGACAATGGTGGGTGGTCTAAGAAGGGTAACTCTTCAGGAGGAGCAAATACTTCAAACACAACTTCGAATGTCAATAGTCATTCACAAATCAGACCTCATACTCAACCCTCTTCCAGCAACAACTCACTGAATCACAGAGTTTCACAAAGGGATGAACCTTCCTATCGTACCCAGAATGGAAACTCGGGTCAGCATCACACGGTCAACTCCCGAATTTCTAATGCTTCTGGTTCCGATTATGACAAAATGTCATCTCAAGAAGCTTTCAAGAGGACCCTTCCATTATCTCTTCAGTCATCAATAACAAAGGCTCTTTCATCTTCCTCATTTGCACCTGATATCAGAGCAAGCAGCTCAAAAGATCACATGAGTAGCAGTCACTTTCATGATACATATAATAGTCGTCGCCATGGAGTAGGGCCTACCATGACCGGTGACAAGAGCTACATTCGTGACAATTATAACAGGGGAAATGATGGAGATCGTTTTATGTTTCAAAATGGCGGGAGTAGGATTCTTCCTTCATCTTTGGCACATGGAAAGGCTATAAATCCACAGTTCGCCAGTTCCAGTGAATCTGCATACCGTTCTGGAGATATATATATATATATATCATATTTAATTGTGATTTGGGTATGGTTGTCGCAGGATCTCTATCGATCAAAGACGGAGACTGATTTACCTGATGGTCTTATGTCTGTCCCTCTTCTGAGACATCAGAAAATTGGATTAGCGTGGATGCTTCAGAAGGAAAACAGAAGTTTGCATTGCCTGGGGGGTATTTTGGCTGATGACCAGGGCCTTGGAAAGACAATTTCGATGATTGCCCTTATCCTAATGCAGAGGTCATTGCAGTCAAAATCAAGAACAGATGATGCATTCAATCATAAAACTGAAGCTTTGAATTTGGATGATGATGATGATGATAATGGTATTGTTGATGTGGATAAGATTAAAAAGAATGAAGAAGCTGATGATATAAATCCTATTACAGAACCAAGCAGTTCAATACGGGCACCAAGTAGGAAAAGGCCTGCTGCTGGTACATTGGTTGTCTGTCCTGCAAGTGTTGTTCGACAGTGGGCCAGGGAGCTTGATGAAAAAGTTGGAAATGAAAAGCTTTCTGCTTTAATTTATCATGGGGGCAGTAGGACAAAAAATCCCGATGAGCTAGCAACATATGATGTGGTTATCACAACATACGCTATTGTGACTAATGAAGTTCCAAAGCAACCATTAGTGGACGAGGATGAAAGCGATGAAAAAAATGGCGAAAGATTTGGGTTATCTTCTGAGTTTTCTGCAAGTAAAAAGAGGAAAAAGACATACAATGGAAATAAGAAGAGTAGAAAGGGTAGAAAGGGAATTGACAGCTCTCTTGATTGTGGTTCTGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATCAAGAACCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGGGCCAAAAGAAGGTGGTGCTTATCTGGAACGCCTATCCAAAATACTATTGACGATCTGTATAGCTACTTTAGGTTCCTAAGGTATGATCCTTATGCTGTATATAAGTCATTCTACAATACAATTAAAGTTCCGATATCCAGAAATGCTGTCCAAGGTTACAAGAAGCTTCAAGCAGTCTTGAGGGCCATAATGCTACGTCGTACAAAAGGTACTTTGATTGATGGGCAGCCAATTATCAATTTGCCCCCTAAAACAATTGAGCTCAGTAAGGTGGATTTCTCTAGTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCGGATTCACGTTCTCAATTTAAGGCATATGCTGCTGCTGGCACAGTGAACCAGAACTATGCAAATATTCTTTTAATGCTTTTACGACTCCGTCAGGCTTGTGACCACCCACTTCTTGTTAAAGATTATAATTCCAATCCTGTCGGACAGGATTCTATTGAAATGGCAAAAAGGCTTCCAAGGGATTTACTCATTAATCTATTCAAGGAATTGGATACAACCTCTGCTATCTGCCATGTTTGCAACGATCCACCTGAAGACCCTGTTATTACTATGTGTAGCCATGTCTTCTGTTATCAATGTGTATCAGACTTTTTGACTGCTGATGATAATACGTGCCCCGCAACTTATTGTAAAGAAACAGTTGGTGAAGATGTTGTTTTCTCCAAAGCTACTTTGAGAAGCTGCATCTCTGATGATCTTGGTGGCAGTAGTTCCTCAAATTCGCATCATGTTGATTATTCACTATTTCAAGATAGTGAGTACAATTCATCTAAAATCAAAGCTGTCCTTGAGATTCTTATGTCAAATCGTAAAATGAAGGCTCCTACTTATGGCTCACCGAATTCCTGTGGAGGCCGTGGAGATTTACTGTCTTCTGATATTTCATTTATTGAAGATTGCGATTCAGATGTTCAGGTTACAAAACACACAAAAAAATATTCAGAGCCCACGACTGAAGGACCAATAAAGGCGATAATTTTTTCCCAGTGGACTAGTATGTTGGACTTAGTCGAGGATGCATTGAAGCAATCTCGAATTCGTATACGATACAGGAGACTTGATGGTAGGATGACTCTACTTGCAAGGGACAAAGCTGTTAAGGATTTTAATACTGATCCTGAGGTAACTGTTATGCTGATGTCACTGAAAGCAGGCAATCTTGGGTTGAATATGGTTGCTGCATGCCAGGTTATTCTTTTGGATCTTTGGTGGAATCCAACAACTGAGGACCAAGCTGTTGATCGAGCTCATAGAATTGGGCAGACTCGTCCTGTTACTGTGACGCGTCTCACTATAAAAGATACAGTTGAAGACAGAATACTTGCTCTTCAGGAAGAAAAGAGAAAGATGGTTGCATCTGCATTTGGTGAAGACCATGCTGGCGGTACAGCAACGCGTCTTACAGTGGATGATCTGAAATATCTTTTTATGGTCTAG 3072 0.4105 MDNYICLSSSDDDLEEIEDPRRSLPQWAAPERNSDNGGWSKKGNSSGGANTSNTTSNVNSHSQIRPHTQPSSSNNSLNHRVSQRDEPSYRTQNGNSGQHHTVNSRISNASGSDYDKMSSQEAFKRTLPLSLQSSITKALSSSSFAPDIRASSSKDHMSSSHFHDTYNSRRHGVGPTMTGDKSYIRDNYNRGNDGDRFMFQNGGSRILPSSLAHGKAINPQFASSSESAYRSGDIYIYISYLIVIWVWLSQDLYRSKTETDLPDGLMSVPLLRHQKIGLAWMLQKENRSLHCLGGILADDQGLGKTISMIALILMQRSLQSKSRTDDAFNHKTEALNLDDDDDDNGIVDVDKIKKNEEADDINPITEPSSSIRAPSRKRPAAGTLVVCPASVVRQWARELDEKVGNEKLSALIYHGGSRTKNPDELATYDVVITTYAIVTNEVPKQPLVDEDESDEKNGERFGLSSEFSASKKRKKTYNGNKKSRKGRKGIDSSLDCGSGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLRYDPYAVYKSFYNTIKVPISRNAVQGYKKLQAVLRAIMLRRTKGTLIDGQPIINLPPKTIELSKVDFSSEERAFYTKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYNSNPVGQDSIEMAKRLPRDLLINLFKELDTTSAICHVCNDPPEDPVITMCSHVFCYQCVSDFLTADDNTCPATYCKETVGEDVVFSKATLRSCISDDLGGSSSSNSHHVDYSLFQDSEYNSSKIKAVLEILMSNRKMKAPTYGSPNSCGGRGDLLSSDISFIEDCDSDVQVTKHTKKYSEPTTEGPIKAIIFSQWTSMLDLVEDALKQSRIRIRYRRLDGRMTLLARDKAVKDFNTDPEVTVMLMSLKAGNLGLNMVAACQVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIKDTVEDRILALQEEKRKMVASAFGEDHAGGTATRLTVDDLKYLFMV* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0622 1023 Gene3D - 614 1022 IPR027417 -
Lan8g0622 1023 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 850 1018 IPR001650 -
Lan8g0622 1023 Gene3D - 367 452 IPR038718 -
Lan8g0622 1023 SMART helicmild6 880 965 IPR001650 -
Lan8g0622 1023 MobiDBLite consensus disorder prediction 37 119 - -
Lan8g0622 1023 Pfam Zinc finger, C3HC4 type (RING finger) 715 751 - -
Lan8g0622 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 599 IPR027417 -
Lan8g0622 1023 SMART ring_2 715 753 IPR001841 -
Lan8g0622 1023 ProSitePatterns Zinc finger RING-type signature. 730 739 IPR017907 -
Lan8g0622 1023 CDD DEXDc_SHPRH-like 270 599 - -
Lan8g0622 1023 Pfam Helicase conserved C-terminal domain 867 965 IPR001650 -
Lan8g0622 1023 SUPERFAMILY RING/U-box 710 752 - -
Lan8g0622 1023 MobiDBLite consensus disorder prediction 472 491 - -
Lan8g0622 1023 MobiDBLite consensus disorder prediction 154 168 - -
Lan8g0622 1023 SMART ultradead3 266 578 IPR014001 -
Lan8g0622 1023 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 51 1022 - -
Lan8g0622 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 1022 IPR027417 -
Lan8g0622 1023 Gene3D - 248 328 IPR038718 -
Lan8g0622 1023 Gene3D - 467 611 IPR038718 -
Lan8g0622 1023 MobiDBLite consensus disorder prediction 1 119 - -
Lan8g0622 1023 Pfam SNF2-related domain 273 676 IPR000330 GO:0005524|GO:0140658
Lan8g0622 1023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 767 IPR013083 -
Lan8g0622 1023 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 51 1022 - -
Lan8g0622 1023 MobiDBLite consensus disorder prediction 142 185 - -
Lan8g0622 1023 CDD SF2_C_SNF 864 975 - -
Lan8g0622 1023 ProSiteProfiles Zinc finger RING-type profile. 715 751 IPR001841 -
Lan8g0622 1023 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 285 561 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0622 Lan-Chr8 8508018 8519232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0622 62 923 RAD5 or RAD16-like Gene Family AT1G50410 55.272 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan8g0622 SNF2_N 5.4e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0622 - - lang:109335781 1699.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0622 8 8508018 8519232 Lan20g0272 20 1838320 1848230 LSH
Lan8g0622 8 8508018 8519232 Lan4g1608 4 25051935 25061586 LSH