Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0616 ATGGCATCAACATCTTGTGTTAGTAAGAGTCTGCTACCAATGAAAGAAACAGTACCAGCTTTGAGCTATTGTGCATATCCTACCCCTCTCGCAAAATATGAGGAGGTTGCAGAGAATTCTAAGGTCTTCATGTTTACCTTGGAGAAACTCCATGCTGAAATGGGTACCAAGTTCATGATTCCCATTATTGGGGGAAGAGAACTAGATTTGCATCGCCTTTTTGTTGAAGTAACTTCTCGTGGAGGGTTTGAGAAGATAATTAAAGAGAGAAAATGGAAAGAAGTAACTGTAGTTTTCAATTTTCCGTCAACAGCTACAAATGCTTCTTTTGTTTTGCGAAAGTATTATAGTTCATTGCTTTTCCATTATGAACAAATATACTACTTCAAAGCCCTGGGATGGGCCCCTCCTACTACTTCTGATGCTTTGCAGAGTCAATCAACTATGCCAGCTCCTGTTCAAAATATGCACATTTTGCAGCCTCAATTCGGAATTCAATCACCCGCCTTTCAGCAGTCAAGTTCTAATGCTACTGAATTGCGTGAAGGCTCTGCAATCATCGGGGTCATTGATGGGAAATTCGAAAGTGGTTACCTAGTTACTGTCACAATAGGTTCAGAGAAACTCAAAGGTGTTCTTTACCAAGCTCCACAAAACACCACATTTTCGGCATCCCATCCTAGTTTTTCGGCTAATAACAATAATGCCTCTGGTCCATTGGGTGTCGCTCGTCGCCGACGGAGGAAAAAATCAGAAATAAAAAGGAGAGATCCCGCTCATCCGAAACCCAACAGAAGTGGTTACAATTTCTTCTTCGCAGAACAACACGCAAGACTAAAATCACTTCACCAAGGGAAGGACAGGGACATTAGTAGGGTGATTGGTGATCTCTGGAACAAGTTAAATGAATCGGAAAAATCAGTTTATCAAGAGAAGGCTGTGAAGGATAAAGAGAGGTACAAAGCAGAAATGGAGGGTTATCGCGAGAAACAGAAGATGGATCATATTATCCGTGATGCTGTTCCGCTGCAGCAACGATTTCCACAACCAGCTACTGATATGGTGGATGCTGAGGCTGACTCGTTTCAAACTCCTGAGGAGAGCAGTTCTGGTGAAAGTAACCAGGAAGACGGTAGAAGTATGGAAAAAGATTTCGACATGGATGCATCACATGCTATAGGAGAATCTAGGTTCTTGGGTTCAGAGAAGTAA 1212 0.4216 MASTSCVSKSLLPMKETVPALSYCAYPTPLAKYEEVAENSKVFMFTLEKLHAEMGTKFMIPIIGGRELDLHRLFVEVTSRGGFEKIIKERKWKEVTVVFNFPSTATNASFVLRKYYSSLLFHYEQIYYFKALGWAPPTTSDALQSQSTMPAPVQNMHILQPQFGIQSPAFQQSSSNATELREGSAIIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNTTFSASHPSFSANNNNASGPLGVARRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKSLHQGKDRDISRVIGDLWNKLNESEKSVYQEKAVKDKERYKAEMEGYREKQKMDHIIRDAVPLQQRFPQPATDMVDAEADSFQTPEESSSGESNQEDGRSMEKDFDMDASHAIGESRFLGSEK* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0616 403 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 261 328 IPR009071 -
Lan8g0616 403 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 391 - -
Lan8g0616 403 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 391 - -
Lan8g0616 403 MobiDBLite consensus disorder prediction 345 403 - -
Lan8g0616 403 SUPERFAMILY HMG-box 249 331 IPR036910 -
Lan8g0616 403 CDD ARID_HMGB9-like 39 124 IPR045303 GO:0003677
Lan8g0616 403 SMART hmgende2 260 329 IPR009071 -
Lan8g0616 403 MobiDBLite consensus disorder prediction 224 239 - -
Lan8g0616 403 Gene3D High mobility group box domain 245 340 IPR036910 -
Lan8g0616 403 SMART bright_3 38 129 IPR001606 GO:0003677
Lan8g0616 403 ProSiteProfiles ARID domain profile. 37 128 IPR001606 GO:0003677
Lan8g0616 403 Pfam HMG (high mobility group) box 261 328 IPR009071 -
Lan8g0616 403 Coils Coil 310 330 - -
Lan8g0616 403 Pfam ARID/BRIGHT DNA binding domain 41 124 IPR001606 GO:0003677
Lan8g0616 403 SMART ARID_2 34 124 - -
Lan8g0616 403 Gene3D - 28 132 IPR036431 GO:0003677
Lan8g0616 403 SUPERFAMILY ARID-like 35 136 IPR036431 GO:0003677
Lan8g0616 403 CDD HMGB-UBF_HMG-box 261 325 - -
Lan8g0616 403 MobiDBLite consensus disorder prediction 372 391 - -
Lan8g0616 403 PRINTS High mobility group (HMG1/HMG2) protein signature 293 312 - -
Lan8g0616 403 PRINTS High mobility group (HMG1/HMG2) protein signature 312 332 - -
Lan8g0616 403 MobiDBLite consensus disorder prediction 224 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0616 Lan-Chr8 8327436 8332284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0616 1 358 ARID Transcription Factor Family AT1G04880 58.981 1.05e-133 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lan8g0616 ARID 4.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0616 - - gmx:100783284 561.607