Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0597 ATGGGATCGGTGTTACCATACAGTGATGTTGATTCCACCTTGAGGGCAATGGCCGGTCGCGCCGAGGGTTTCGGCTACCTCGCCATCGGTGGCCTCAACGGTCCTCTCTATTCCGTCACCACCCTCTCAGATGATGGTCCTGGGTCTCTTCGTGAAGGATGTCGTAGAAAGGAGCCTCTATGGATTGTTTTCGCAGTTTCAGGCACAATTCATCTTTCATCATATCTGAGTGTGTCATCTTATAAGACCGTAGATGGCAGAGGCCAGAGGATAAAACTGACTGGTAAAGGCTTGAGGCTGAAAGAATGTGAGCACATAATTATATGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTGGATGGCATTCAAATAAAACCAAATTCTAGGCACATATGGATAGATCGATGCAGCCTTCGTGATTATGATGATGGGCTGATAGACATTACAAGACAAAGCACGGATATTACAGTATCTAGGTGCTACTTTGCACAGCATGACAAGACCATGCTGATTGGAGCTGATCCATCTCATGTTGGTGATAGATGCATCCGGGTGACTATTCATCATTGTTTCTTTGATGGAACACGGCAAAGACAACCTCGTGTGAGGTTTGGAAAAGTTCATCTATACAACAATTACACCAGAAACTGGGGAATATATGCTGTTTGTGCTAGTGTTGAGTCCCAGATATACTCTCAATGCAACATATATGAAGCAGGAACTAAGAAAAAGACTTTTGAGTTTTACACTGAGAAGGCTGCAGATAAGGAAGAGCACAAATCTGGGTTTATAATATCTGAAGGAGACATGTTCCTGAATGGTGCTCAACCTTGCTCACCTATAGAATACAAGGAAGAATCAATGTTCCACCCTAGTGAATATTACCCAACATGGACAATGGAAACAGCTGCAGATTCTTTCAGGGAAATCCTCCAATTATGTACTGGTTGGCAATCCATTTCTAGGCCAGTAGACCATATTCAATAA 993 0.4361 MGSVLPYSDVDSTLRAMAGRAEGFGYLAIGGLNGPLYSVTTLSDDGPGSLREGCRRKEPLWIVFAVSGTIHLSSYLSVSSYKTVDGRGQRIKLTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGTKKKTFEFYTEKAADKEEHKSGFIISEGDMFLNGAQPCSPIEYKEESMFHPSEYYPTWTMETAADSFREILQLCTGWQSISRPVDHIQ* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0597 330 SMART amb_all 32 245 IPR002022 -
Lan8g0597 330 PANTHER PECTATE LYASE 4 326 - -
Lan8g0597 330 Pfam Pectate lyase 76 238 IPR002022 -
Lan8g0597 330 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Lan8g0597 330 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Lan8g0597 330 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Lan8g0597 330 SUPERFAMILY Pectin lyase-like 18 283 IPR011050 -
Lan8g0597 330 Gene3D - 7 312 IPR012334 -
Lan8g0597 330 PANTHER PECTATE LYASE 18-RELATED 4 326 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0597 Lan-Chr8 8219406 8221939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0597 44 328 Polysaccharide Lyase AT3G55140 83.860 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0597 K01728 - gmx:100802068 612.453