Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0571 ATGGCAGCTATGAAACTTCAGGCACGAAGAGAAGAGAATGCAGGGTTTCTAAAGTTCAAAGGTGTTGTGCCTCAGCAAAATGGGCATTGGGGTGCACAAATATATGCAAATCACCACAGAATCTGGCTAGGGACATTCAAGTCAGAAAGAGAGGCTGCAATGGCTTATGATAGCGCGACGATTAAGCTTCGAAGCGGAGAAAGCCACAGAAACTTTCCATGGAATGATCAATCAGTTCTAGAGCCTCAGTTTCAAAGTCCTTATAGCACAGAAGCAGTGCTTACCATGATAAAAGATGGAACCTACCCATCAAAATTTGCTACTTTTCTTAGGACCCAAACACAAGTTGATGAAGAATTTGGTGTTGTTAGTAACAAAAGTAAACATATAAGAATGAAGGGTCATGAGGAAAACTTGTCCTGCACCTTACTTTTTCAAAAAGAATTGACACCAAGTGATGTAGGGAAACTCAATAGGCTTGTGATACCAAAAATACATGCAGTTACATATTTCCCTAATGTTTTTGGCATTGCAGAAGCTAAGAATAATGAAATGGATGTTGATATTGAGGTTGTCTTTTATGACAAGCTCATGAGATCATGGAACTTTAGATATTGTTATTGGAATAGCAGCCAAAGTTATGTGTTCACAAGAGGGTGGAACAGGTTTGTGAAGGATAAGAAATTAAGGGCTAAAGACATCATTGCTTTTTATGTGTGTGAACCTATAAACTTGAGAAGAGGGGAAGAAAGTTTTTCATTGATAGATGTAATATATTATAATGAAGATCATGAGAAAAAGCAATGTTTTGAAGAGAAGGAAGATGCAAAAAAAGCTTTAGGGAACATGTTAAGTTCAAGTGATGAAGTAGAAGAAAAAGATGAAGGACAAGAGACCAAGGATATAAAGGATTTTGATGCACTGCATTCACCAAATAATAGTGCACAGAAAGGTTTGAGGCTCTTTGGTGTTTGTATCAGCTGA 984 0.375 MAAMKLQARREENAGFLKFKGVVPQQNGHWGAQIYANHHRIWLGTFKSEREAAMAYDSATIKLRSGESHRNFPWNDQSVLEPQFQSPYSTEAVLTMIKDGTYPSKFATFLRTQTQVDEEFGVVSNKSKHIRMKGHEENLSCTLLFQKELTPSDVGKLNRLVIPKIHAVTYFPNVFGIAEAKNNEMDVDIEVVFYDKLMRSWNFRYCYWNSSQSYVFTRGWNRFVKDKKLRAKDIIAFYVCEPINLRRGEESFSLIDVIYYNEDHEKKQCFEEKEDAKKALGNMLSSSDEVEEKDEGQETKDIKDFDALHSPNNSAQKGLRLFGVCIS* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0571 327 MobiDBLite consensus disorder prediction 284 314 - -
Lan8g0571 327 Pfam B3 DNA binding domain 145 239 IPR003340 GO:0003677
Lan8g0571 327 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 7 327 - -
Lan8g0571 327 ProSiteProfiles AP2/ERF domain profile. 18 73 IPR001471 GO:0003700|GO:0006355
Lan8g0571 327 SUPERFAMILY DNA-binding pseudobarrel domain 142 242 IPR015300 -
Lan8g0571 327 ProSiteProfiles B3 DNA-binding domain profile. 145 258 IPR003340 GO:0003677
Lan8g0571 327 SMART B3_2 145 249 IPR003340 GO:0003677
Lan8g0571 327 CDD AP2 18 75 IPR001471 GO:0003700|GO:0006355
Lan8g0571 327 Gene3D AP2/ERF domain 18 74 IPR036955 GO:0003700|GO:0006355
Lan8g0571 327 SUPERFAMILY DNA-binding domain 18 75 IPR016177 GO:0003677
Lan8g0571 327 CDD B3_DNA 144 238 IPR003340 GO:0003677
Lan8g0571 327 Pfam AP2 domain 18 64 IPR001471 GO:0003700|GO:0006355
Lan8g0571 327 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 7 327 IPR044800 GO:0003700
Lan8g0571 327 SMART rav1_2 18 79 IPR001471 GO:0003700|GO:0006355
Lan8g0571 327 Gene3D - 141 264 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0571 Lan-Chr8 7891866 7892910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0571 18 261 RAV Transcription Factor Family AT1G51120 59.055 3.00e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan8g0571 B3 1.4e-23 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0571 8 7891866 7892910 Lan4g1569 4 24731609 24732652 LSH