Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0570 ATGGATCGAAAGAGGGGAATACATGCTCCTTCTTCTGCTTTCAATGCTAATGGCTCCGCCAAGAAACCTCGCCAAGAAATGGAGTCCTTTACAACTGGTATAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGTACCTCTGGCTGTCCATTTGGTGAGGGATGTCATTTCCTGCATTATGTTCCCGGTGGCTTCAAAGCTGTCTCTCAGGTGATGAACGTTGGTAGCAGTCCTGCTATTCAACAAGGTGGCAGAAATCAAACGGCTCCACCTTCCTTCCCCGATGGGTCTTCTCCTCCAGCTGTTAAAAACCGGTTGTGCAGCAAGTATAATTCTGCTGGAGGTTGCAAATTTGGTGACAAATGTCACTTTGCCCATGGTGAGTGGGAGCTTGGCAAACCTACAGCCCCATCATATGAAGATCCTCGTGGCTTTGGACAAATGCAAAGCAATAGGATTGGTGGCCGATCTGATCCCCCACATCCATCTCATGGAGCTGCCGCCGGCTTTGGAGCATCGGCCACTGCTAAGATTAGTATCAATGCATCTCTAGCTGGAGCTGTCATTGGAAAAAATGGTGTCAACTCTAAGCAAATTTGCCGCATAACTGGAGCAAAACTTTCTATTAGGGACCATGACTCAGATCCTAACCTTAGGAACATTGAGCTTGAAGGCAGTTTCGATCAGATCAAACAAGCCAGTGGCATGGTTCATGAACTTATTCTAAATGTCAGTTCTAGTGCCGCTGGACCTCCAATGAAAAACTTCACTTCACAGAGTCATTCCCCTGCAAACAACTTCAAGACTAAGATGTGTGAAAACTTTGCTAAGGGAAATTGCACATTTGGGGACAGGTGCCACTTTGCACATGGACCAAATGAATTACGTAAGTCTGGAATATGA 906 0.4603 MDRKRGIHAPSSAFNANGSAKKPRQEMESFTTGIGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQVMNVGSSPAIQQGGRNQTAPPSFPDGSSPPAVKNRLCSKYNSAGGCKFGDKCHFAHGEWELGKPTAPSYEDPRGFGQMQSNRIGGRSDPPHPSHGAAAGFGASATAKISINASLAGAVIGKNGVNSKQICRITGAKLSIRDHDSDPNLRNIELEGSFDQIKQASGMVHELILNVSSSAAGPPMKNFTSQSHSPANNFKTKMCENFAKGNCTFGDRCHFAHGPNELRKSGI* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0570 301 CDD KH-I 178 239 - -
Lan8g0570 301 Pfam RNA-binding, Nab2-type zinc finger 40 60 - -
Lan8g0570 301 ProSiteProfiles Zinc finger C3H1-type profile. 267 294 IPR000571 GO:0046872
Lan8g0570 301 MobiDBLite consensus disorder prediction 78 93 - -
Lan8g0570 301 SUPERFAMILY CCCH zinc finger 36 61 IPR036855 GO:0046872
Lan8g0570 301 ProSiteProfiles Zinc finger C3H1-type profile. 102 130 IPR000571 GO:0046872
Lan8g0570 301 MobiDBLite consensus disorder prediction 78 100 - -
Lan8g0570 301 MobiDBLite consensus disorder prediction 1 37 - -
Lan8g0570 301 SUPERFAMILY CCCH zinc finger 101 133 IPR036855 GO:0046872
Lan8g0570 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 106 129 IPR000571 GO:0046872
Lan8g0570 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 293 IPR000571 GO:0046872
Lan8g0570 301 ProSiteProfiles Zinc finger C3H1-type profile. 35 63 IPR000571 GO:0046872
Lan8g0570 301 Pfam KH domain 177 239 IPR004088 GO:0003723
Lan8g0570 301 SMART kh_6 173 243 IPR004087 GO:0003676
Lan8g0570 301 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 9 300 - -
Lan8g0570 301 SMART c3hfinal6 35 62 IPR000571 GO:0046872
Lan8g0570 301 SMART c3hfinal6 104 129 IPR000571 GO:0046872
Lan8g0570 301 SMART c3hfinal6 267 293 IPR000571 GO:0046872
Lan8g0570 301 SUPERFAMILY CCCH zinc finger 267 297 IPR036855 GO:0046872
Lan8g0570 301 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 165 244 IPR036612 GO:0003723
Lan8g0570 301 Gene3D - 264 299 - -
Lan8g0570 301 Gene3D - 97 134 - -
Lan8g0570 301 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 300 - -
Lan8g0570 301 ProSiteProfiles Type-1 KH domain profile. 174 238 - -
Lan8g0570 301 Gene3D K Homology domain, type 1 168 263 IPR036612 GO:0003723
Lan8g0570 301 MobiDBLite consensus disorder prediction 12 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0570 Lan-Chr8 7883869 7887701 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan8g0570 KH_1 6.7e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0570 - - gmx:100792652 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0570 8 7883869 7887701 Lan20g0332 20 2284939 2289663 LSH
Lan8g0570 8 7883869 7887701 Lan4g1568 4 24725275 24730262 LSH