Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0567 ATGTATGTTTGTAATCTGCAGTCTAGACAAATTCTTCCTTTTTTCAAGAATTGCTTTCCGAAGTTGGAACATACTGTAACACTGCATTTCTCAGCAGCAGGCTTCACAATCACAAGGGGTGCCTCAACCTACTCCTCCCATGGACATGGTATCTCCAACAGTGGCCACGCCCATACAGTTTCAAGGTTGAAGACTCAATTGAGCTTCACGGGTCAAGATTCTCTTTCCCAGATATCGGAAGTGAGTGAAAATATTGAGGAGGGTACCACTTCTGATAATGGCCACCATAGACCTGTGCATTCTTATGCTACCACTAGCTTTGGAATGGAACCTTGGGACAATTCTAATTCCATTGTCTTCTCCGCCCCACCAACCAAACGGTCTAAGAATATGGATGGAGATATTCTAAACTGTCTCAATGCCTTGGAATCTCAGTTTAGTCTGCCACAAACAACTCTGGAAATGGCAACAGTGGAAAACCTATTGCATATTCCTGAAGATTCTGTCCCTTGTAAAATCCGTGCTAAGCGAGGCTGTGCTACTCATCCACGTAGCATTGCAGAACGGGAGAGAAGAACTAGAATAAGTGGGAAGCTGAAGAAACTACAGGACCTTGTACCAAATATGGATAAGCAAACAAGCTATTCAGACATGCTGGATTTGGCTGTTCAACATATTAAAGGTCTTCAAAGTCAAGTTCAGAAACTTCACAATGAACTTGAGAACTGCACTTGTGGATGCAAAGAAAGCATGTAA 756 0.4272 MYVCNLQSRQILPFFKNCFPKLEHTVTLHFSAAGFTITRGASTYSSHGHGISNSGHAHTVSRLKTQLSFTGQDSLSQISEVSENIEEGTTSDNGHHRPVHSYATTSFGMEPWDNSNSIVFSAPPTKRSKNMDGDILNCLNALESQFSLPQTTLEMATVENLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQSQVQKLHNELENCTCGCKESM* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0567 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 229 IPR011598 GO:0046983
Lan8g0567 251 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 29 244 - -
Lan8g0567 251 CDD bHLH_AtbHLH_like 184 236 IPR045239 -
Lan8g0567 251 PANTHER TRANSCRIPTION FACTOR BHLH129 29 244 - -
Lan8g0567 251 SMART finulus 185 235 IPR011598 GO:0046983
Lan8g0567 251 Pfam Helix-loop-helix DNA-binding domain 184 230 IPR011598 GO:0046983
Lan8g0567 251 Coils Coil 219 239 - -
Lan8g0567 251 Gene3D - 180 248 IPR036638 GO:0046983
Lan8g0567 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 244 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0567 Lan-Chr8 7846779 7850976 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0567 35 249 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 58.824 3.11e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan8g0567 HLH 6.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0567 - - lang:109353868 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0567 8 7846779 7850976 Lan4g1563 4 24684907 24688449 LSH