Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0566 ATGTATTCTTCTTCTTCCTCTTCTTCTTCACAAACCGGGTTAACCCGTTACGCATCTGCACCCAGTTCTCTTCTCACCACCGCCGTTGACGCCGTCATCAGCGCCGGATCCCACCCTTTACCGCCTCAATACTTCTCCGGCGAGTCGTCGGAGCCGAATTTTCAGGCCTTAGGCGGAGGAGGATCTTCATCCAATTTGATCCGCCAGAAAAGCTCCCCCGCCGGGTTCCTCAACCACCTCGCCACCACTTTACATCATCCCGATAATGCAGCAGGCTTCACAATCACAAGGGGTGCCTCAACCTACTCCTCCCATGGACATGGTATCTCCAACAGTGGCCACGCCCATACAGTTTCAAGGTTGAAGACTCAATTGAGCTTCACGGGTCAAGATTCTCTTTCCCAGATATCGGAAGTGAGTGAAAATATTGAGGAGGGTACCACTTCTGATAATGGCCACCATAGACCTGTGCATTCTTATGCTACCACTAGCTTTGGAATGGAACCTTGGGACAATTCTAATTCCATTGTCTTCTCCGCCCCACCAACCAAACGGTCTAAGAATATGGATGGAGATATTCTAAACTGTCTCAATGCCTTGGAATCTCAGTTTAGTCTGCCACAAACAACTCTGGAAATGGCAACAGTGGAAAACCTATTGCATATTCCTGAAGATTCTGTCCCTTGTAAAATCCGTGCTAAGCGAGGCTGTGCTACTCATCCACGTAGCATTGCAGAACGGGAGAGAAGAACTAGAATAAGTGGGAAGCTGAAGAAACTACAGGACCTTGTACCAAATATGGATAAGCAAACAAGCTATTCAGACATGCTGGATTTGGCTGTTCAACATATTAAAGGTCTTCAAAGTCAAGTTCAGAAACTTCACAATGAACTTGAGAACTGCACTTGTGGATGCAAAGAAAGCATGTAA 930 0.4688 MYSSSSSSSSQTGLTRYASAPSSLLTTAVDAVISAGSHPLPPQYFSGESSEPNFQALGGGGSSSNLIRQKSSPAGFLNHLATTLHHPDNAAGFTITRGASTYSSHGHGISNSGHAHTVSRLKTQLSFTGQDSLSQISEVSENIEEGTTSDNGHHRPVHSYATTSFGMEPWDNSNSIVFSAPPTKRSKNMDGDILNCLNALESQFSLPQTTLEMATVENLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQSQVQKLHNELENCTCGCKESM* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0566 309 SMART finulus 243 293 IPR011598 GO:0046983
Lan8g0566 309 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 302 - -
Lan8g0566 309 Pfam Helix-loop-helix DNA-binding domain 242 288 IPR011598 GO:0046983
Lan8g0566 309 PANTHER TRANSCRIPTION FACTOR BHLH129 13 302 - -
Lan8g0566 309 Gene3D - 238 306 IPR036638 GO:0046983
Lan8g0566 309 Coils Coil 277 297 - -
Lan8g0566 309 CDD bHLH_AtbHLH_like 242 294 IPR045239 -
Lan8g0566 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 237 287 IPR011598 GO:0046983
Lan8g0566 309 MobiDBLite consensus disorder prediction 43 69 - -
Lan8g0566 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 240 301 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0566 Lan-Chr8 7837432 7846923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0566 66 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 56.452 1.64e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan8g0566 HLH 8.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0566 - - lang:109353868 446.432