Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0556 ATGGTAATCGAGCAACAAGAGAAGAATGAACATGAAAACAACGATGGTGATAACAATGGCTACATCCATGAAGCTAAGACTCTCATCTCTGCCGTTAATTTCCTCTCTCGAAATCTCCCTCTTCCACCTCATCTCCTTAACTCCGTTTCAACCATCTATCACAATACACCACTCACTGACAAAGTAGGAGATTCTAAAGATGATTTAATTACAGATCTTGAAGATGCACTATCAAAGCAACGCCCAAATTGTGCATCAGGTTTCAAACTGGCGAAAGCAAGGGAAAACCGTTATCAAAGTCAGATTCAACATCGACTAAAACAACTTGAAGAATTGCCTTCAAGCAGAGGAGAGGACCTGCAGACGAAATGCCTCCTTGAACTTTATGGACTAAAGCTAGCAGAGTTGCAGTCGAAAGTTCGGTCTTCTGTGAGTTCTGAGTACTGGCTCAATGTGAAATGTGCATATTCTGACAAACAATTGTTTGATTGGGGCATGATGAGATTACAACGTCCTCTGTATGGCGTTGGAGATCCATTTGCTACGGATGCTGATGATCAACTAAGGAAGAAACGGGACGCTGAGAGATTATCAAGATTAGAAGAGGAGGAAAAAAATCACATAGAGACTAGAAAAAGAAGATTTTTTGCAGAAATACTTAATACTGTCCGTGAGTTCCAACTACAAATCCAAGCTTCTTTGAAGCGGAGAAAACAAAGGAACGACGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGGGCATCACGAGCAGAGAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGCAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACTCCAAACGTTCAGATGGTATTGAACCCTTGGAAGATTCTGAAGCTGAATTACCTGAGTCAGACACTTCAAAGAATGGGATTTCTAAGGAATCTCCTCTAGATGAAGATGTGATAGATTCTGATCATAACGACGATTCTAGTGATTTACTTGAAGGTCAGCGGCAATATATTTCTGCCATACATTCAATTGAAGAAAAGGTAACTGAGCAACCATCTTCTCTTCAAGGTGGAGAGTTAAGACAATACCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACCATACAAACTATTTCGCTGATAGCATATCTTATCGAATACAAAGGTGTGGCAGGTCCCCACATGATTGTTGCTCCAAAGGCTGTTTTGCCAAATTGGGTCCATGAATTCGCGACATGGGCTCCTAGCATTAAAGCCATTCTTTATGATGGACGGCTTGAAGAGAGGAAAGCAATGAAGGAAGAATTGTTGGGGGAGGGGAAGTTTAATGTTCTGTTAACACACTATGATCTTATAATGAGAGATAAAGCTGTTCTCAAGAAAATTCACTGGCACTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAGTCTGCTCTAGCAAGAACCCTGGACTCTGGGGGCTATCACATCCAACGCAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAATTGTGGTCCCTGCTTAATTTTCTCCTTCCAAACATTTTTAACTCAGTTCAGAATTTTGAGGAGTGGTTTAATGCACCCTTTTCAGACCGAGTTGATGTGTCTCTTACAGATGAAGAACAGCTATTGATCATTCGGCGTTTACATCAGGTAATAAGGCCCTTCATACTAAGAAGGAAAAAGGATGAGGTGGAAAAATATCTTCCTCAGAAATCTCAGGTGATACTCAAATGTGATATGTCAGCCTGGCAAAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGCTTAGACAATGGTTCTAGAAGATCAAAAAGTCTACAGAACTTAACAATGCAACTTAGAAAATGTTGTAACCATCCCTACCTCTTCGTGGGAGATTATGATATGTATAGACGTAAGGAAGAGATTGTCAGAGCATCAGGCAAGTTTGAACTTCTTGACCGTCTGCTCCCAAAACTTCGTAGAGCTGGCCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACGTTCTTGAAATATACTTGCAACTTCATGATTTTAAGTATCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGCTCTCTACTACGGCAATTTAATGCTCCTGACTCCCCGTACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTACAAACAGCAGATACCGTTATAATCTTTGACAGCGATTGGAATCCCCAGATGGATCAACAAGCTGAGGATCGAGCACATCGTATTGGACAAAAAAAGGAAGTTAGGGTATTTGTGTTGGTTAGCGTAGGATCAATTGAAGAGGTGATTTTGGAGCGGGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATTCAGGCAGGACTTTTCAACACAACCTCAACAGCCCAAGACAGGAGAGAAATGTTAGAGGAGATTATGCGTAGAGGTACCAACTCACTTGGTACAGATGTACCTAGTGAGAGAGAAATTAACCGCCTTGCAGCCCGATCAGACGAGGAATTTTGGCTGTTTGAAAAAATGGATGAAGATAGAAGGCAAAAGGAGAAGTACAGATCCCGTCTCATGGATGAGCATGAATTGCCAGATTGGGTGTACTCTCCACTTAATAACGATGATAAGGCCAAAGCTTTCAACAGTACTAGTGTTACTGGAAAGCGGAAAAGAAAAGATGTGGTATATGCAGATACATTAAGTGATCTACAATGGGCGAAAGCTGTGGAGAGTGGGGTAGACATATCAAATCTTTCGGTTAAAGGGAAAAGAAGAGATCAATTCCGATCTGACAGCATTGTACAAGCCAGCGATAATTCAGGGGCAGAAGAAAGGTTTTTAGAGTTAAGGACGGAAAGTTTCGGCCCCATGGCAGAGGAGAGAACAAGTGAAGATAGTTCTTATGTGATGCCAGCTTCAAAGAGACTCAAGCATGAAGGAACAAGTTCTCATGCGTACGATGATGTCAGAGGAAATGGTCTGAATCAGAACATGTTATCTTGGAATACTCACAAAAAGAAGAGATCAAACTATCTTGGCCAAGGTTCATCATCTGATAGTAGAGGGCAGAATTCAAATGGAAGAGCAAACTGGAACTGA 3282 0.4138 MVIEQQEKNEHENNDGDNNGYIHEAKTLISAVNFLSRNLPLPPHLLNSVSTIYHNTPLTDKVGDSKDDLITDLEDALSKQRPNCASGFKLAKARENRYQSQIQHRLKQLEELPSSRGEDLQTKCLLELYGLKLAELQSKVRSSVSSEYWLNVKCAYSDKQLFDWGMMRLQRPLYGVGDPFATDADDQLRKKRDAERLSRLEEEEKNHIETRKRRFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRASRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKRSDGIEPLEDSEAELPESDTSKNGISKESPLDEDVIDSDHNDDSSDLLEGQRQYISAIHSIEEKVTEQPSSLQGGELRQYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLIEYKGVAGPHMIVAPKAVLPNWVHEFATWAPSIKAILYDGRLEERKAMKEELLGEGKFNVLLTHYDLIMRDKAVLKKIHWHYLIVDEGHRLKNHESALARTLDSGGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEEWFNAPFSDRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPQKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSRRSKSLQNLTMQLRKCCNHPYLFVGDYDMYRRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLQLHDFKYLRLDGSTKTEERGSLLRQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTNSLGTDVPSEREINRLAARSDEEFWLFEKMDEDRRQKEKYRSRLMDEHELPDWVYSPLNNDDKAKAFNSTSVTGKRKRKDVVYADTLSDLQWAKAVESGVDISNLSVKGKRRDQFRSDSIVQASDNSGAEERFLELRTESFGPMAEERTSEDSSYVMPASKRLKHEGTSSHAYDDVRGNGLNQNMLSWNTHKKKRSNYLGQGSSSDSRGQNSNGRANWN* 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0556 1093 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 703 870 IPR001650 -
Lan8g0556 1093 Gene3D - 360 613 IPR038718 -
Lan8g0556 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 867 IPR027417 -
Lan8g0556 1093 SMART SnAC_2 906 967 IPR029295 GO:0042393
Lan8g0556 1093 MobiDBLite consensus disorder prediction 307 358 - -
Lan8g0556 1093 Pfam Snf2-ATP coupling, chromatin remodelling complex 906 966 IPR029295 GO:0042393
Lan8g0556 1093 SMART helicmild6 729 813 IPR001650 -
Lan8g0556 1093 MobiDBLite consensus disorder prediction 239 258 - -
Lan8g0556 1093 MobiDBLite consensus disorder prediction 1049 1093 - -
Lan8g0556 1093 SMART ultradead3 384 578 IPR014001 -
Lan8g0556 1093 Gene3D - 620 919 IPR027417 -
Lan8g0556 1093 CDD SF2_C_SNF 691 824 - -
Lan8g0556 1093 Pfam Helicase conserved C-terminal domain 700 813 IPR001650 -
Lan8g0556 1093 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 400 567 IPR014001 -
Lan8g0556 1093 PANTHER ATP-DEPENDENT HELICASE BRM 24 1032 - -
Lan8g0556 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 614 IPR027417 -
Lan8g0556 1093 Pfam SNF2-related domain 391 680 IPR000330 GO:0005524|GO:0140658
Lan8g0556 1093 MobiDBLite consensus disorder prediction 1011 1093 - -
Lan8g0556 1093 PANTHER SNF2/RAD54 HELICASE FAMILY 24 1032 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0556 Lan-Chr8 7756025 7766133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0556 696 841 RAD5 or RAD16-like Gene Family AT5G43530 36.667 1.06e-20 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan8g0556 SNF2_N 1.1e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0556 - - lang:109355051 2138.23