Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0546 ATGGGTGTTGTTTCTTTTATGTTATTTTCATTCTTATGTTGTCTCTTTGTCATACCCATACCCCAAGCCAGAGCCGATGAGCCATACCATTGTTACAACGATATAGGTAACTACACATCCAATAGCACATACAAAACCAATCTCAACAACGTGCTTTCTACTCTCATAAATTCTCCCAACACAGAAAATAGTTACGGTTTCTACAACCTCACTTATGGAGAAAAGAGTGACAAAGTATACACGATTGGGTTGTGTAGTGGAGATGTTAACTCAGAGGATTGTAGTAGTTGCTTTAACGAATCTAGTGTCTCACTCACAAAGCTATGTCCAAACCAGAAAGGTGCAATTAGGTGGACTAGTCGCTGCATATTGCGTTACTCTAATCACTCAATATTTGGCATCTTAGATACTGGAACTAGGGTTATTTTTTATAATACAGCAGATGCAAGAAATACAACTCAATTCACCCAAGTTCTAAATAACCTAATGATAAACCTGATTACAATAGCTGCATCTGGTGATTCTCGTAGAAAGTATGCAACGGGAAATTCAAATGATGTTCCGTTACAAACAATACATGGTCTTGTGCAGTGTACACCTGATTTGTCTCAATATGATTGTAATTCATGCTTAAATGATGTTTTCTCATATCTCTCAGTCTTTTATGGTAAGGTAGGTGGTTTGGTATATACAACCACTTGCATTATAAGATATGAAACTTACAACTTCTTCGGACCTACAATAGATCTACCATCATCGTCATCATCGTCACCATCACCGTTATCATCACCGGAGCTGCCTTGGGGAACAACTCACAGCTCTTCCTCGATAGGAAAGAGGAACATATCTCGAACTGCTATCATAGTAGCTGTGCTTGTTATCGTTCTTGTTGTTTCACTGATCATTTGTGTCCCCCTCTATTTAAGACGAAGAAAGGCAAGGAAATTTCTTAAAGCTGAAGAGGATGATGATAATGACGACATTACAACTAGAGAGACATTGCAATTCAACTTTGACACCATAAGAGTTGCTACAAGTGGATTCTCTAGTTCTAATAAACTAGGGCAAGGTGGATTTGGAGCTGTTTATAAGGGTAGGCTTTCTAATGGAGAAGACATAGCTGTGAAAAGGTTGTCAAGGGAATCAGGCCAAGGAGATATTGAATTTGAGAATGAAGTACTTTTAGTGGCTAAACTTCAACACAGAAATTTAGTTAGGCTACTTGGTTTCTGCATAGAAGGGAGAGAAAGACTACTTGTCTATGAATTTGTTCCAAATAAAAGCCTTGATTATTTCATATTCGATCAAATAAAGAAAGGAGAATTGGATTGGGTAAGGCGCTACAAAATCATCGGTGGAATTGCTCGAGGCCTTCTTTACCTTCATGAGGACTCTCGATTGCGTATCATACATCGTGATCTGAAAGCAAGTAACATACTCTTAGATGAAGATATGAATCCCAAGATATCAGATTTTGGAATGGCAAGACTCTTTGTTGTGGATCAGACACAAGGAAACACAAGTAGAGTTGTTGGAACATATGGATATATGGCACCAGAATATGCATTGCATGGACAATTTTCAGTAAAAACAGATGTGTTTAGTTTTGGTGTGTTGGTTCTTGAGATTGTGAGTAGTCAGAAAAATGGAGGCATTCATTATAGCGAGAATATGGAGGATCTTCTAACCTTTGTATGGAGAAACTGGAAGAATGGATCTACAAGGAATATTATGGATCCCACATTAAACAATGGTTCATTAAATGAAATCATGAGATGCATCCACATTGGGTTGCTTTGTGTTCAACAAAATGTAGCTGAGAGACCAACCATGGCTTCTGTTGTGTTAATGCTTAATAGCAATTCTGTGGCTTTGCCAGTACCTTCAGAACCTGCATTTTTTGTAGGTACAAGAACTGGAAACATTTCATGGGATTATAATTCTAGGGCAATGAGTTCAATTCAATCTAGTCAATCTAGAAATATATCAGCTCAAGAATCAGTAAATGAAGCTTCCATTACTGAGCCTTATCCTCGATAG 2040 0.3784 MGVVSFMLFSFLCCLFVIPIPQARADEPYHCYNDIGNYTSNSTYKTNLNNVLSTLINSPNTENSYGFYNLTYGEKSDKVYTIGLCSGDVNSEDCSSCFNESSVSLTKLCPNQKGAIRWTSRCILRYSNHSIFGILDTGTRVIFYNTADARNTTQFTQVLNNLMINLITIAASGDSRRKYATGNSNDVPLQTIHGLVQCTPDLSQYDCNSCLNDVFSYLSVFYGKVGGLVYTTTCIIRYETYNFFGPTIDLPSSSSSSPSPLSSPELPWGTTHSSSSIGKRNISRTAIIVAVLVIVLVVSLIICVPLYLRRRKARKFLKAEEDDDNDDITTRETLQFNFDTIRVATSGFSSSNKLGQGGFGAVYKGRLSNGEDIAVKRLSRESGQGDIEFENEVLLVAKLQHRNLVRLLGFCIEGRERLLVYEFVPNKSLDYFIFDQIKKGELDWVRRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDEDMNPKISDFGMARLFVVDQTQGNTSRVVGTYGYMAPEYALHGQFSVKTDVFSFGVLVLEIVSSQKNGGIHYSENMEDLLTFVWRNWKNGSTRNIMDPTLNNGSLNEIMRCIHIGLLCVQQNVAERPTMASVVLMLNSNSVALPVPSEPAFFVGTRTGNISWDYNSRAMSSIQSSQSRNISAQESVNEASITEPYPR* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0546 679 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 661 - -
Lan8g0546 679 SMART serkin_6 348 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g0546 679 MobiDBLite consensus disorder prediction 254 277 - -
Lan8g0546 679 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Lan8g0546 679 Gene3D - 138 243 IPR038408 -
Lan8g0546 679 Gene3D - 26 130 IPR038408 -
Lan8g0546 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Lan8g0546 679 ProSiteProfiles Protein kinase domain profile. 348 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g0546 679 Pfam Protein tyrosine and serine/threonine kinase 351 616 IPR001245 GO:0004672|GO:0006468
Lan8g0546 679 CDD STKc_IRAK 354 619 - -
Lan8g0546 679 MobiDBLite consensus disorder prediction 657 672 - -
Lan8g0546 679 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 4 661 - -
Lan8g0546 679 Gene3D Phosphorylase Kinase; domain 1 310 423 - -
Lan8g0546 679 ProSiteProfiles Gnk2-homologous domain profile. 26 131 IPR002902 -
Lan8g0546 679 SUPERFAMILY Protein kinase-like (PK-like) 330 618 IPR011009 -
Lan8g0546 679 Gene3D Transferase(Phosphotransferase) domain 1 424 625 - -
Lan8g0546 679 MobiDBLite consensus disorder prediction 657 679 - -
Lan8g0546 679 Pfam Salt stress response/antifungal 150 241 IPR002902 -
Lan8g0546 679 Pfam Salt stress response/antifungal 31 128 IPR002902 -
Lan8g0546 679 ProSiteProfiles Gnk2-homologous domain profile. 137 243 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0546 Lan-Chr8 7679476 7684215 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0546 7 679 Receptor kinase-like Gene Family AT4G21410 47.346 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lan8g0546 PK_Tyr_Ser-Thr 6.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0546 - - gmx:100796158 793.497