Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0542 ATGTCCAAGAAAAAGTCTAGTTTGGGTCGCCAAAAGATTCCTATTGAAAAAATACCGAAAAAGAGTCATCTACAAGTTACTTTCTCTAAGCGTCGTTCAGGACTATTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGTAGAGATTACGATTGTAGTTTTCTCTCCGGCTGATAAAGCATTCTCTTTTGGACATCCTGAAGTTGAGTCCATTATCGATCGATATATGACTCGAAACACTCCACCAGAATGTAGTGCTCGTCAACTTGTTGAGGCTCATAGAAATGCTAATGTTCGTGATCTCAACATGCAATTGACTCAGCTTCTTAACCATTTGGAGATTGAAAAGAAAGGAGGAGAGGAGCTAGATCATGTGAGAAAAGCTAGGCAGAGGCAATTTTGGTGGGAAAGCCAAGTTGATGAGCTTGGCTTGCATGAATTGCTACAATTGAAGGTTTCAATTGAGGAGTTGAAGAAGAATTTGGGAAAACATGCTAGCAAAATCATGATGGAGCAAACAAATATGAATTCAATTGTTGGGGCTAATGGGTTTGGACGTTATGATGCTTTTGAGAACAAATCTGGTGTTGGGTTGAATATTGCTTCTACCCTTCCAAATAATGCCTATTATCTCGGTTTTAGGCATGCCTACCTTTGA 660 0.3985 MSKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEITIVVFSPADKAFSFGHPEVESIIDRYMTRNTPPECSARQLVEAHRNANVRDLNMQLTQLLNHLEIEKKGGEELDHVRKARQRQFWWESQVDELGLHELLQLKVSIEELKKNLGKHASKIMMEQTNMNSIVGANGFGRYDAFENKSGVGLNIASTLPNNAYYLGFRHAYL* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0542 219 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Lan8g0542 219 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Lan8g0542 219 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Lan8g0542 219 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Lan8g0542 219 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Lan8g0542 219 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Lan8g0542 219 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Lan8g0542 219 Coils Coil 96 116 - -
Lan8g0542 219 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Lan8g0542 219 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 177 - -
Lan8g0542 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Lan8g0542 219 Gene3D - 89 183 - -
Lan8g0542 219 PANTHER MADS BOX PROTEIN 7 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0542 Lan-Chr8 7654544 7655449 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0542 7 162 Type I MADS-box Gene Family AT2G24840 54.088 1.72e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan8g0542 SRF-TF 1.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0542 - - lja:Lj0g3v0067779.1 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0542 8 7654544 7655449 Lan20g0367 20 2553403 2554616 LSH